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Update README.md
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yil8 committed Jan 13, 2016
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Expand Up @@ -39,7 +39,7 @@ Prerequisites

* [Scipy](http://www.scipy.org/)(>=0.10). You can download the source of Scipy from [here](http://sourceforge.net/projects/scipy/files/).

* [Pysam](https://code.google.com/p/pysam/)(>=0.7). Pysam_0.7X preferred, Pysam_0.8X tested and seems to be much slower (using the example data with 5 cores Intel i7, Pysam_0.7.5 took ~4 hours and Pysam_0.8.4 took ~17 hours). To install Pysam, you also need to install [Cython](http://cython.org/) first.
* [Pysam](https://code.google.com/p/pysam/)(>=0.7). Pysam_0.7X preferred, Pysam_0.8X tested and seems to be much slower (preprocessing the example data with 5 cores Intel i7, Pysam_0.7.5 took ~4 hours and Pysam_0.8.4 took ~17 hours). To install Pysam, you also need to install [Cython](http://cython.org/) first.

**Optional**
* [matplotlib](http://matplotlib.org/)(>=1.2.0) is required to plot BAF heat map.
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