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[develop] Add verification of snowfall accumulation #853

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cb3a355
Initial work to add NOHRSC snowfall accumulation obs pulling and pcpc…
willmayfield Jun 23, 2023
338dbdf
new files for snowfall accumulation obs pulling and pcpcombine
willmayfield Jun 23, 2023
6ea427b
metplus conf files for pcp_combine and gridstat related to accumulate…
willmayfield Jun 23, 2023
94fabfd
GridStat vx for snowfall accumulation
willmayfield Jun 27, 2023
412dd33
Changes for ensemble verification of snowfall accumulation
willmayfield Jun 29, 2023
6385801
documentation and cleanup for snowfall vx
willmayfield Jul 6, 2023
53ad792
documentation formatting
willmayfield Jul 6, 2023
cb2fe28
clean whitespace
willmayfield Jul 6, 2023
1d80d7b
documentation updates and code cleanup
willmayfield Jul 6, 2023
b7c3f2e
Resolve conflicts
willmayfield Jul 6, 2023
951137c
new files for snowfall accumulation obs pulling and pcpcombine
willmayfield Jun 23, 2023
dda8aea
metplus conf files for pcp_combine and gridstat related to accumulate…
willmayfield Jun 23, 2023
c64a051
GridStat vx for snowfall accumulation
willmayfield Jun 27, 2023
e35769f
Changes for ensemble verification of snowfall accumulation
willmayfield Jun 29, 2023
8409c61
documentation and cleanup for snowfall vx
willmayfield Jul 6, 2023
fc1d90b
documentation formatting
willmayfield Jul 6, 2023
25446be
clean whitespace
willmayfield Jul 6, 2023
edf6e3e
documentation updates and code cleanup
willmayfield Jul 6, 2023
e6a906a
Merge branch 'feature/snowfall_vx' of https://github.com/willmayfield…
willmayfield Jul 6, 2023
a23b55e
Remove ncpairs output turned on by default
willmayfield Jul 6, 2023
12fc095
fix typos and duplicated line
willmayfield Jul 12, 2023
6557a3f
Corrected names of tasks for vx docs, and incorporated fixes for runn…
willmayfield Jul 16, 2023
666fbe9
Merge branch 'feature/snowfall_vx' of https://github.com/willmayfield…
willmayfield Jul 16, 2023
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16 changes: 12 additions & 4 deletions docs/UsersGuide/source/ConfigWorkflow.rst
Original file line number Diff line number Diff line change
Expand Up @@ -151,23 +151,31 @@ METplus Parameters
* ``SS`` refers to the two-digit valid seconds of the hour

``CCPA_OBS_DIR``: (Default: "")
User-specified location of top-level directory where CCPA hourly precipitation files used by METplus are located. This parameter needs to be set for both user-provided observations and for observations that are retrieved from the NOAA :term:`HPSS` (if the user has access) via the ``GET_OBS_CCPA`` task. (This task is activated in the workflow by using the taskgroup file ``parm/wflow/verify.yaml``).
User-specified location of top-level directory where CCPA hourly precipitation files used by METplus are located. This parameter needs to be set for both user-provided observations and for observations that are retrieved from the NOAA :term:`HPSS` (if the user has access) via the ``get_obs_ccpa`` task. (This task is activated in the workflow by using the taskgroup file ``parm/wflow/verify_pre.yaml``).

METplus configuration files require the use of a predetermined directory structure and file names. If the CCPA files are user-provided, they need to follow the anticipated naming structure: ``{YYYYMMDD}/ccpa.t{HH}z.01h.hrap.conus.gb2``, where YYYYMMDD and HH are as described in the note :ref:`above <METParamNote>`. When pulling observations from NOAA HPSS, the data retrieved will be placed in the ``CCPA_OBS_DIR`` directory. This path must be defind as ``/<full-path-to-obs>/ccpa/proc``. METplus is configured to verify 01-, 03-, 06-, and 24-h accumulated precipitation using hourly CCPA files.

.. note::
There is a problem with the valid time in the metadata for files valid from 19 - 00 UTC (i.e., files under the "00" directory). The script to pull the CCPA data from the NOAA HPSS (``scripts/exregional_get_obs_ccpa.sh``) has an example of how to account for this and organize the data into a more intuitive format. When a fix is provided, it will be accounted for in the ``exregional_get_obs_ccpa.sh`` script.

``NOHRSC_OBS_DIR``: (Default: "")
User-specified location of top-level directory where NOHRSC 06- and 24-hour snowfall accumulation files (available every 6 and 12 hours respectively) used by METplus are located. This parameter needs to be set for both user-provided observations and for observations that are retrieved from the NOAA :term:`HPSS` (if the user has access) via the ``get_obs_nohrsc`` task. (This task is activated in the workflow by using the taskgroup file ``parm/wflow/verify_pre.yaml``).

METplus configuration files require the use of a predetermined directory structure and file names. If the NOHRSC files are user-provided, they need to follow the anticipated naming structure: ``{YYYYMMDD}/sfav2_CONUS_{AA}h_{YYYYMMDD}{HH}_grid184.grb2``, where AA is the 2-digit accumulation duration, and YYYYMMDD and HH are as described in the note :ref:`above <METParamNote>`. When pulling observations from NOAA HPSS, the data retrieved will be placed in the ``NOHRSC_OBS_DIR`` directory. This path must be defind as ``/<full-path-to-obs>/nohrsc/proc``. METplus is configured to verify 06-, and 24-h accumulated precipitation using NOHRSC files.

.. note::
Due to limited availability of NOHRSC observation data on NOAA HPSS, and the likelihood that snowfall acumulation verification will not be desired outside of winter cases, this verification option is currently not present in the workflow by default. In order to use it, the verification environment variable VX_FIELDS should be updated to include ``ASNOW``. This will allow the related workflow tasks to be run.

``MRMS_OBS_DIR``: (Default: "")
User-specified location of top-level directory where MRMS composite reflectivity files used by METplus are located. This parameter needs to be set for both user-provided observations and for observations that are retrieved from the NOAA :term:`HPSS` (if the user has access) via the ``GET_OBS_MRMS`` task (activated in the workflow automatically when using the taskgroup file ``parm/wflow/verify.yaml``). When pulling observations directly from NOAA HPSS, the data retrieved will be placed in this directory. Please note, this path must be defind as ``/<full-path-to-obs>/mrms/proc``.
User-specified location of top-level directory where MRMS composite reflectivity files used by METplus are located. This parameter needs to be set for both user-provided observations and for observations that are retrieved from the NOAA :term:`HPSS` (if the user has access) via the ``get_obs_mrms`` task (activated in the workflow automatically when using the taskgroup file ``parm/wflow/verify_pre.yaml``). When pulling observations directly from NOAA HPSS, the data retrieved will be placed in this directory. Please note, this path must be defind as ``/<full-path-to-obs>/mrms/proc``.

METplus configuration files require the use of a predetermined directory structure and file names. Therefore, if the MRMS files are user-provided, they need to follow the anticipated naming structure: ``{YYYYMMDD}/MergedReflectivityQCComposite_00.50_{YYYYMMDD}-{HH}{mm}{SS}.grib2``, where YYYYMMDD and {HH}{mm}{SS} are as described in the note :ref:`above <METParamNote>`.

.. note::
METplus is configured to look for a MRMS composite reflectivity file for the valid time of the forecast being verified; since MRMS composite reflectivity files do not always exactly match the valid time, a script (within the main script that retrieves MRMS data from the NOAA HPSS) is used to identify and rename the MRMS composite reflectivity file to match the valid time of the forecast. The script to pull the MRMS data from the NOAA HPSS has an example of the expected file-naming structure: ``scripts/exregional_get_obs_mrms.sh``. This script calls the script used to identify the MRMS file closest to the valid time: ``ush/mrms_pull_topofhour.py``.

``NDAS_OBS_DIR``: (Default: "")
User-specified location of the top-level directory where NDAS prepbufr files used by METplus are located. This parameter needs to be set for both user-provided observations and for observations that are retrieved from the NOAA :term:`HPSS` (if the user has access) via the ``GET_OBS_NDAS`` task (activated in the workflow automatically when using the taskgroup file ``parm/wflow/verify.yaml``). When pulling observations directly from NOAA HPSS, the data retrieved will be placed in this directory. Please note, this path must be defined as ``/<full-path-to-obs>/ndas/proc``. METplus is configured to verify near-surface variables hourly and upper-air variables at 00 and 12 UTC with NDAS prepbufr files.
User-specified location of the top-level directory where NDAS prepbufr files used by METplus are located. This parameter needs to be set for both user-provided observations and for observations that are retrieved from the NOAA :term:`HPSS` (if the user has access) via the ``get_obs_ndas`` task (activated in the workflow automatically when using the taskgroup file ``parm/wflow/verify_pre.yaml``). When pulling observations directly from NOAA HPSS, the data retrieved will be placed in this directory. Please note, this path must be defined as ``/<full-path-to-obs>/ndas/proc``. METplus is configured to verify near-surface variables hourly and upper-air variables at 00 and 12 UTC with NDAS prepbufr files.

METplus configuration files require the use of predetermined file names. Therefore, if the NDAS files are user-provided, they need to follow the anticipated naming structure: ``prepbufr.ndas.{YYYYMMDDHH}``, where YYYYMMDDHH is as described in the note :ref:`above <METParamNote>`. The script to pull the NDAS data from the NOAA HPSS (``scripts/exregional_get_obs_ndas.sh``) has an example of how to rename the NDAS data into a more intuitive format with the valid time listed in the file name.

Expand Down Expand Up @@ -380,7 +388,7 @@ Verification Parameters
---------------------------

``GET_OBS``: (Default: "get_obs")
Set the name of the Rocoto workflow task used to load proper module files for ``GET_OBS_*`` tasks. Users typically do not need to change this value.
Set the name of the Rocoto workflow task used to load proper module files for ``get_obs_*`` tasks. Users typically do not need to change this value.


.. _NCOModeParms:
Expand Down
3 changes: 3 additions & 0 deletions docs/UsersGuide/source/Glossary.rst
Original file line number Diff line number Diff line change
Expand Up @@ -188,6 +188,9 @@ Glossary
netCDF
NetCDF (`Network Common Data Form <https://www.unidata.ucar.edu/software/netcdf/>`__) is a file format and community standard for storing multidimensional scientific data. It includes a set of software libraries and machine-independent data formats that support the creation, access, and sharing of array-oriented scientific data.

NOHRSC
The National Operational Hydrologic Remote Sensing Center, which provides the National Snowfall Analysis, an observation-based, gridded estimate of recent snowfall, now an operational product.

NSSL
The `National Severe Storms Laboratory <https://www.nssl.noaa.gov/>`__.

Expand Down
22 changes: 16 additions & 6 deletions docs/UsersGuide/source/RunSRW.rst
Original file line number Diff line number Diff line change
Expand Up @@ -170,7 +170,7 @@ Configuration parameters in the ``config_defaults.yaml`` file appear in :numref:
| | PARTITION_HPSS, QUEUE_HPSS, PARTITION_FCST, QUEUE_FCST, |
| | RUN_CMD_UTILS, RUN_CMD_FCST, RUN_CMD_POST, SLURM_NATIVE_CMD, |
| | MODEL, MET_INSTALL_DIR, METPLUS_PATH, MET_BIN_EXEC, CCPA_OBS_DIR, |
| | MRMS_OBS_DIR, NDAS_OBS_DIR |
| | MRMS_OBS_DIR, NDAS_OBS_DIR, NOHRSC_OBS_DIR |
+-----------------------------+-----------------------------------------------------------------------+
| Workflow | WORKFLOW_ID, USE_CRON_TO_RELAUNCH, CRON_RELAUNCH_INTVL_MNTS, |
| | EXPT_BASEDIR, EXPT_SUBDIR, EXEC_SUBDIR, DOT_OR_USCORE, |
Expand Down Expand Up @@ -278,6 +278,8 @@ The user must specify certain basic experiment configuration information in a ``
+--------------------------------+-------------------+------------------------------------+
| CCPA_OBS_DIR | "" | "" |
+--------------------------------+-------------------+------------------------------------+
| NOHRSC_OBS_DIR | "" | "" |
+--------------------------------+-------------------+------------------------------------+
| MRMS_OBS_DIR | "" | "" |
+--------------------------------+-------------------+------------------------------------+
| NDAS_OBS_DIR | "" | "" |
Expand Down Expand Up @@ -722,12 +724,14 @@ Users who have already staged the observation data needed for METplus (i.e., the

platform:
CCPA_OBS_DIR: /path/to/UFS_SRW_App/develop/obs_data/ccpa/proc
NOHRSC_OBS_DIR: /path/to/UFS_SRW_App/develop/obs_data/nohrsc/proc
MRMS_OBS_DIR: /path/to/UFS_SRW_App/develop/obs_data/mrms/proc
NDAS_OBS_DIR: /path/to/UFS_SRW_App/develop/obs_data/ndas/proc
rocoto:
tasks:
taskgroups: '{{ ["parm/wflow/prep.yaml", "parm/wflow/coldstart.yaml", "parm/wflow/post.yaml", "parm/wflow/verify.yaml"]|include }}'
task_get_obs_ccpa:
task_get_obs_nohrsc:
task_get_obs_mrms:
task_get_obs_ndas:

Expand Down Expand Up @@ -827,18 +831,24 @@ In addition to the baseline tasks described in :numref:`Table %s <WorkflowTasksT
| **Workflow Task** | **Task Description** |
+=======================+============================================================+
| GET_OBS_CCPA | Retrieves and organizes hourly :term:`CCPA` data from NOAA |
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@willmayfield @gspetro This is not directly related to this PR, but we will have to update the names of the vx and related tasks in this table, e.g. GET_OBS_CCPA becomes get_obs_ccpa, etc. I think I'll do that as part of Issue #630.

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@gsketefian I'm actually working on updates now! The code is in my text/ug-updates branch.
RTD version here: https://srw-ug.readthedocs.io/en/text-ug-updates/BuildingRunningTesting/RunSRW.html#vxworkflowtaskstable
I'm generally not touching much of the VX stuff, but since I'm updating the run chapter, I did get update some of the info there.

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One thing I was trying to decide was whether to name the (meta)tasks based on what is in the YAML config file or based on what the Rocoto/log output is. I went with what is in the YAML because that is the name users may actually add/change/remove in their config file.

| | HPSS. Can only be run if ``verify.yaml`` is included in a |
| | ``tasksgroups`` list *and* user has access to NOAA |
| | HPSS. Can only be run if ``verify_pre.yaml`` is included |
| | in a ``tasksgroups`` list *and* user has access to NOAA |
| | :term:`HPSS` data. |
+-----------------------+------------------------------------------------------------+
| GET_OBS_NOHRSC | Retrieves and organizes hourly :term:`NOHRSC` data from |
| | NOAA HPSS. Can only be run if ``verify_pre.yaml`` is |
| | included in a ``tasksgroups`` list *and* user has access |
| | to NOAA :term:`HPSS` data. ``ASNOW`` should also be added |
| | to the ``VX_FIELDS`` list. |
+-----------------------+------------------------------------------------------------+
| GET_OBS_NDAS | Retrieves and organizes hourly :term:`NDAS` data from NOAA |
| | HPSS. Can only be run if ``verify.yaml`` is included in a |
| | ``tasksgroups`` list *and* user has access to NOAA |
| | HPSS. Can only be run if ``verify_pre.yaml`` is included |
| | in a ``tasksgroups`` list *and* user has access to NOAA |
| | :term:`HPSS` data. |
+-----------------------+------------------------------------------------------------+
| GET_OBS_MRMS | Retrieves and organizes hourly :term:`MRMS` composite |
| | reflectivity and :term:`echo top` data from NOAA HPSS. Can |
| | only be run if ``verify.yaml`` is included in a |
| | only be run if ``verify_pre.yaml`` is included in a |
| | ``tasksgroups`` list *and* user has access to NOAA |
| | :term:`HPSS` data. |
+-----------------------+------------------------------------------------------------+
Expand Down
91 changes: 91 additions & 0 deletions jobs/JREGIONAL_GET_OBS_NOHRSC
Original file line number Diff line number Diff line change
@@ -0,0 +1,91 @@
#!/bin/bash

#
#-----------------------------------------------------------------------
#
# This script pulls NOHRSC observation data for comparison to the model for
# the requested accumulations. Supported accumulations: 01h, 03h, and 06h.
# NOTE: Accumulation is currently hardcoded to 06h.
# The verification uses MET/pcp-combine to sum 06h files into
# desired accumulations.
#
#-----------------------------------------------------------------------
#

#
#-----------------------------------------------------------------------
#
# Source the variable definitions file and the bash utility functions.
#
#-----------------------------------------------------------------------
#
. $USHdir/source_util_funcs.sh
source_config_for_task " " ${GLOBAL_VAR_DEFNS_FP}
. $USHdir/job_preamble.sh
#
#-----------------------------------------------------------------------
#
# Save current shell options (in a global array). Then set new options
# for this script/function.
#
#-----------------------------------------------------------------------
#
{ save_shell_opts; . $USHdir/preamble.sh; } > /dev/null 2>&1
#
#-----------------------------------------------------------------------
#
# Get the full path to the file in which this script/function is located
# (scrfunc_fp), the name of that file (scrfunc_fn), and the directory in
# which the file is located (scrfunc_dir).
#
#-----------------------------------------------------------------------
#
scrfunc_fp=$( $READLINK -f "${BASH_SOURCE[0]}" )
scrfunc_fn=$( basename "${scrfunc_fp}" )
scrfunc_dir=$( dirname "${scrfunc_fp}" )
#
#-----------------------------------------------------------------------
#
# Print message indicating entry into script.
#
#-----------------------------------------------------------------------
#
print_info_msg "
========================================================================
Entering script: \"${scrfunc_fn}\"
In directory: \"${scrfunc_dir}\"

This is the J-job script for the task that pulls NOHRSC observation data
for verification purposes.
========================================================================"

#
#
#-----------------------------------------------------------------------
#
# Call the ex-script for this J-job and pass to it the necessary varia-
# bles.
#
#-----------------------------------------------------------------------
#
$SCRIPTSdir/exregional_get_obs_nohrsc.sh || \
print_err_msg_exit "\
Call to ex-script corresponding to J-job \"${scrfunc_fn}\" failed."
#
#-----------------------------------------------------------------------
#
# Run job postamble.
#
#-----------------------------------------------------------------------
#
job_postamble
#
#-----------------------------------------------------------------------
#
# Restore the shell options saved at the beginning of this script/func-
# tion.
#
#-----------------------------------------------------------------------
#
{ restore_shell_opts; } > /dev/null 2>&1

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