Releases: uio-bmi/compairr
CompAIRR 1.11.0: Add distance option, fix keep-columns option name
CompAIRR 1.10.0
CompAIRR 1.10.0 introduces the new options --keep_columns (or -k) and --cdr3.
The --keep_columns option will copy specified columns from both input files into the pairs file when using the --pairs (or -p) option. Multiple column names separated by commas may be specified.
The --cdr3 option will use the cdr3 or cdr3_aa column instead of the default junction or junction_aa column.
Default repertoire ID's (1 or 2, respectively) will be used if the column is missing.
CompAIRR 1.9.0
CompAIRR 1.9.0 increases the resolution of timings to nanoseconds.
CompAIRR 1.8.0
Detect sequence duplicates. Add command to deduplicate datasets. Update documentation.
CompAIRR 1.7.0
Added option to compute Morisita-Horn or Jaccard index. Allow any distance d, albeit slow when d>2.
CompAIRR 1.6.1
Fix segfault with d=3 and very short sequences.
CompAIRR 1.6.0
Add support for up to 3 substitutions (d=3) using the -d 3 option. It will be very slow, but perhaps usable for small datasets.
CompAIRR 1.5.1
This version fixes another segmentation fault in clustering.
CompAIRR 1.5.0
Add -u option to ignore sequences with unknown symbols. Update documentation. Fix segmentation fault bug when clustering.
CompAIRR 1.4.1
Updated documentation with information about benchmarking and preprint.