added command to update obsolete variables in IN.DAT #2378
Workflow file for this run
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| --- | |
| name: PROCESS main/develop testing | |
| on: | |
| pull_request: | |
| push: | |
| permissions: | |
| contents: read | |
| pages: write | |
| id-token: write | |
| jobs: | |
| make: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Build PROCESS | |
| run: | | |
| git config --global --add safe.directory '*' | |
| cmake -S. -Bbuild | |
| cmake --build build | |
| - name: Archive build artifacts in process | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: | | |
| process/**/*.so | |
| process/io/python_fortran_dicts.json | |
| - name: Archive coverage data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: coverage-artifacts | |
| path: | | |
| build/CMakeFiles/process.dir/source/fortran/*.gcno | |
| lcov_results | |
| - name: Archive ford artifacts | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ford-artifact | |
| path: build/ford_project.pickle | |
| unit-test: | |
| runs-on: ubuntu-latest | |
| needs: make | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| # Editable install to match default install | |
| run: | | |
| pip install -e '.[test, examples]' | |
| pip install -r requirements_dev.txt | |
| - name: Run unit tests | |
| run: | | |
| pytest --cov=process tests/unit -v \ | |
| --cov-report xml | |
| - name: Archive unit test coverage data | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: unit-coverage-artifacts | |
| path: .coverage | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| fail_ci_if_error: ${{ github.ref_name == 'main' }} | |
| integration-test: | |
| runs-on: ubuntu-latest | |
| needs: make | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| # Editable install to match default install | |
| run: | | |
| pip install -e '.[test, examples]' | |
| pip install -r requirements_dev.txt | |
| - name: Install poppler | |
| run: | | |
| sudo apt update | |
| sudo apt install poppler-utils | |
| - name: Run integration tests | |
| run: pytest tests/integration -n auto -v | |
| regression-test: | |
| runs-on: ubuntu-latest | |
| needs: [make, tracking] | |
| # depend on make and tracking job, check make job was successful | |
| # but dont skip if tracking was skipped | |
| if: always() && needs.make.result == 'success' | |
| continue-on-error: true | |
| strategy: | |
| matrix: | |
| tolerance: [0, 5] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| # Editable install to match default install | |
| run: | | |
| pip install -e '.[test, examples]' | |
| pip install -r requirements_dev.txt | |
| - name: Allow git commands to be run | |
| run: git config --global --add safe.directory '*' | |
| - name: Run regression tests | |
| run: pytest tests/regression -sv --reg-tolerance=${{ matrix.tolerance }} | |
| run-tracking-inputs: | |
| runs-on: ubuntu-latest | |
| needs: make | |
| if: github.ref == 'refs/heads/main' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install -e . | |
| - name: Run regression input files | |
| run: | | |
| process -i tests/regression/input_files/large_tokamak.IN.DAT | |
| mv tests/regression/input_files/large_tokamak.MFILE.DAT tracking/large_tokamak_MFILE.DAT | |
| process -i tests/regression/input_files/st_regression.IN.DAT | |
| mv tests/regression/input_files/st_regression.MFILE.DAT tracking/st_regression_MFILE.DAT | |
| process -i tests/regression/input_files/large_tokamak_nof.IN.DAT | |
| mv tests/regression/input_files/large_tokamak_nof.MFILE.DAT tracking/large_tokamak_nof_MFILE.DAT | |
| process -i tests/regression/input_files/large_tokamak_once_through.IN.DAT | |
| mv tests/regression/input_files/large_tokamak_once_through.MFILE.DAT tracking/large_tokamak_once_through_MFILE.DAT | |
| process -i tests/regression/input_files/stellarator.IN.DAT | |
| mv tests/regression/input_files/stellarator.MFILE.DAT tracking/stellarator_MFILE.DAT | |
| process -i tests/regression/input_files/IFE.IN.DAT | |
| mv tests/regression/input_files/IFE.MFILE.DAT tracking/IFE_MFILE.DAT | |
| - name: Archive tracked MFILEs | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: tracked-mfiles | |
| path: tracking/*_MFILE.DAT | |
| pre-commit-quality-check: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dev dependencies | |
| run: pip install -r requirements_dev.txt | |
| - name: Run pre-commit | |
| run: pre-commit run --all-files | |
| tracking: | |
| concurrency: | |
| group: tracking-jobs | |
| cancel-in-progress: false | |
| runs-on: ubuntu-latest | |
| needs: run-tracking-inputs | |
| if: github.ref == 'refs/heads/main' | |
| env: | |
| COMMIT_MESSAGE: ${{ github.event.head_commit.message }} | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install -e . | |
| - name: Install dev dependencies | |
| run: pip install -r requirements_dev.txt | |
| - name: Setup SSH identity | |
| uses: webfactory/ssh-agent@v0.7.0 | |
| with: | |
| ssh-private-key: ${{ secrets.SSH_PRIVATE_KEY }} | |
| - name: Download tracking data | |
| run: git clone git@github.com:timothy-nunn/process-tracking-data.git process-tracking-data | |
| - name: Download large tokamak MFILE | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: tracked-mfiles | |
| path: tracking/ | |
| - name: Create new tracking entries | |
| shell: bash | |
| run: | | |
| MSG=$(printf "%q " $COMMIT_MESSAGE) | |
| git config --global --add safe.directory '*' | |
| python tracking/tracking_data.py track process-tracking-data --mfile tracking/large_tokamak_MFILE.DAT --hash ${{ github.sha }} --commit "${MSG}" | |
| cp tracking/large_tokamak_MFILE.DAT process-tracking-data/large_tokamak_MFILE_$(git rev-parse HEAD).DAT | |
| python tracking/tracking_data.py track process-tracking-data --mfile tracking/st_regression_MFILE.DAT --hash ${{ github.sha }} --commit "${MSG}" | |
| cp tracking/st_regression_MFILE.DAT process-tracking-data/st_regression_MFILE_$(git rev-parse HEAD).DAT | |
| python tracking/tracking_data.py track process-tracking-data --mfile tracking/large_tokamak_nof_MFILE.DAT --hash ${{ github.sha }} --commit "${MSG}" | |
| cp tracking/large_tokamak_nof_MFILE.DAT process-tracking-data/large_tokamak_nof_MFILE_$(git rev-parse HEAD).DAT | |
| python tracking/tracking_data.py track process-tracking-data --mfile tracking/large_tokamak_once_through_MFILE.DAT --hash ${{ github.sha }} --commit "${MSG}" | |
| cp tracking/large_tokamak_once_through_MFILE.DAT process-tracking-data/large_tokamak_once_through_MFILE_$(git rev-parse HEAD).DAT | |
| python tracking/tracking_data.py track process-tracking-data --mfile tracking/stellarator_MFILE.DAT --hash ${{ github.sha }} --commit "${MSG}" | |
| cp tracking/stellarator_MFILE.DAT process-tracking-data/stellarator_MFILE_$(git rev-parse HEAD).DAT | |
| python tracking/tracking_data.py track process-tracking-data --mfile tracking/IFE_MFILE.DAT --hash ${{ github.sha }} --commit "${MSG}" | |
| cp tracking/IFE_MFILE.DAT process-tracking-data/IFE_MFILE_$(git rev-parse HEAD).DAT | |
| - name: Create the tracking dashboard | |
| run: python tracking/tracking_data.py plot process-tracking-data --out tracking.html | |
| - name: Archive tracking dashboard | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: tracking-html | |
| path: tracking.html | |
| - name: Setup Git identity | |
| run: | | |
| git config --global user.email "${{ github.triggering_actor }}@github.runner" | |
| git config --global user.name "${{ github.job }}" | |
| - name: Commit and push tracking data | |
| run: | | |
| cd process-tracking-data | |
| git add . | |
| git commit -m "${{ github.run_id }}-${{ github.run_number }}-${{ github.run_attempt }}" | |
| git push | |
| docs: | |
| concurrency: | |
| group: docs-jobs | |
| cancel-in-progress: false | |
| runs-on: ubuntu-latest | |
| needs: tracking | |
| if: github.ref == 'refs/heads/main' | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Download build artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: process-build-artifacts | |
| path: process/ | |
| - name: Install PROCESS | |
| run: pip install -e . | |
| - name: Install dev dependencies | |
| run: pip install -r requirements_dev.txt | |
| - name: Install ford | |
| run: pip install git+https://github.com/jonmaddock/ford | |
| - run: ford documentation/ford/index.md | |
| - name: Download ford project | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: ford-artifact | |
| path: build/ | |
| - run: python scripts/document_fortran_interface.py | |
| - run: python scripts/vardes.py | |
| - run: git config --global --add safe.directory '*' | |
| - run: mkdocs build | |
| - run: mv ford_site site | |
| - name: Download tracking html | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: tracking-html | |
| - run: mv tracking.html site || cp site/404.html site/tracking.html | |
| - name: Upload documentation page | |
| uses: actions/upload-pages-artifact@v1 | |
| with: | |
| path: site/ | |
| - name: Deploy GitHub pages | |
| id: deployment | |
| uses: actions/deploy-pages@v2 |