Add L-H threshold comparison plot and improve bootstrap comparison la… #2423
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name: PROCESS main/develop testing | |
on: | |
pull_request: | |
push: | |
permissions: | |
contents: read | |
pages: write | |
id-token: write | |
jobs: | |
make: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Build PROCESS | |
run: | | |
git config --global --add safe.directory '*' | |
cmake -S. -Bbuild | |
cmake --build build | |
- name: Archive build artifacts in process | |
uses: actions/upload-artifact@v3 | |
with: | |
name: process-build-artifacts | |
path: | | |
process/**/*.so | |
process/io/python_fortran_dicts.json | |
- name: Archive coverage data | |
uses: actions/upload-artifact@v3 | |
with: | |
name: coverage-artifacts | |
path: | | |
build/CMakeFiles/process.dir/source/fortran/*.gcno | |
lcov_results | |
- name: Archive ford artifacts | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ford-artifact | |
path: build/ford_project.pickle | |
unit-test: | |
runs-on: ubuntu-latest | |
needs: make | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Download build artifacts | |
uses: actions/download-artifact@v3 | |
with: | |
name: process-build-artifacts | |
path: process/ | |
- name: Install PROCESS | |
# Editable install to match default install | |
run: | | |
pip install -e '.[test, examples]' | |
pip install -r requirements_dev.txt | |
- name: Run unit tests | |
run: | | |
pytest --cov=process tests/unit -v \ | |
--cov-report xml | |
- name: Archive unit test coverage data | |
uses: actions/upload-artifact@v3 | |
with: | |
name: unit-coverage-artifacts | |
path: .coverage | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
env: | |
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
with: | |
fail_ci_if_error: ${{ github.ref_name == 'main' }} | |
integration-test: | |
runs-on: ubuntu-latest | |
needs: make | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Download build artifacts | |
uses: actions/download-artifact@v3 | |
with: | |
name: process-build-artifacts | |
path: process/ | |
- name: Install PROCESS | |
# Editable install to match default install | |
run: | | |
pip install -e '.[test, examples]' | |
pip install -r requirements_dev.txt | |
- name: Install poppler | |
run: | | |
sudo apt update | |
sudo apt install poppler-utils | |
- name: Run integration tests | |
run: pytest tests/integration -n auto -v | |
regression-test: | |
runs-on: ubuntu-latest | |
needs: [make, tracking] | |
# depend on make and tracking job, check make job was successful | |
# but dont skip if tracking was skipped | |
if: always() && needs.make.result == 'success' | |
continue-on-error: true | |
strategy: | |
matrix: | |
tolerance: [0, 5] | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Download build artifacts | |
uses: actions/download-artifact@v3 | |
with: | |
name: process-build-artifacts | |
path: process/ | |
- name: Install PROCESS | |
# Editable install to match default install | |
run: | | |
pip install -e '.[test, examples]' | |
pip install -r requirements_dev.txt | |
- name: Allow git commands to be run | |
run: git config --global --add safe.directory '*' | |
- name: Run regression tests | |
run: pytest tests/regression -sv --reg-tolerance=${{ matrix.tolerance }} | |
run-tracking-inputs: | |
runs-on: ubuntu-latest | |
needs: make | |
if: github.ref == 'refs/heads/main' | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Download build artifacts | |
uses: actions/download-artifact@v3 | |
with: | |
name: process-build-artifacts | |
path: process/ | |
- name: Install PROCESS | |
run: pip install -e . | |
- name: Install dev dependencies | |
run: pip install -r requirements_dev.txt | |
- name: Run regression input files | |
run: python tracking/run_tracking_inputs.py run tests/regression/input_files | |
- name: Archive tracked MFILEs | |
uses: actions/upload-artifact@v3 | |
with: | |
name: tracked-mfiles | |
path: tracking/*_MFILE.DAT | |
pre-commit-quality-check: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
- name: Install dev dependencies | |
run: pip install -r requirements_dev.txt | |
- name: Run pre-commit | |
run: pre-commit run --all-files | |
tracking: | |
concurrency: | |
group: tracking-jobs | |
cancel-in-progress: false | |
runs-on: ubuntu-latest | |
needs: run-tracking-inputs | |
if: github.ref == 'refs/heads/main' | |
env: | |
COMMIT_MESSAGE: ${{ github.event.head_commit.message }} | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Download build artifacts | |
uses: actions/download-artifact@v3 | |
with: | |
name: process-build-artifacts | |
path: process/ | |
- name: Install PROCESS | |
run: pip install -e . | |
- name: Install dev dependencies | |
run: pip install -r requirements_dev.txt | |
- name: Setup SSH identity | |
uses: webfactory/ssh-agent@v0.7.0 | |
with: | |
ssh-private-key: ${{ secrets.SSH_PRIVATE_KEY }} | |
- name: Download tracking data | |
run: git clone git@github.com:timothy-nunn/process-tracking-data.git process-tracking-data | |
- name: Download large tokamak MFILE | |
uses: actions/download-artifact@v3 | |
with: | |
name: tracked-mfiles | |
path: tracking/ | |
- name: Create new tracking entries | |
shell: bash | |
run: | | |
MSG=$(printf "%q " $COMMIT_MESSAGE) | |
git config --global --add safe.directory '*' | |
python tracking/run_tracking_inputs.py track process-tracking-data "${MSG}" ${{ github.sha }} | |
- name: Create the tracking dashboard | |
run: python tracking/tracking_data.py plot process-tracking-data --out tracking.html | |
- name: Archive tracking dashboard | |
uses: actions/upload-artifact@v3 | |
with: | |
name: tracking-html | |
path: tracking.html | |
- name: Setup Git identity | |
run: | | |
git config --global user.email "${{ github.triggering_actor }}@github.runner" | |
git config --global user.name "${{ github.job }}" | |
- name: Commit and push tracking data | |
run: | | |
cd process-tracking-data | |
git add . | |
git commit -m "${{ github.run_id }}-${{ github.run_number }}-${{ github.run_attempt }}" | |
git push | |
docs: | |
concurrency: | |
group: docs-jobs | |
cancel-in-progress: false | |
runs-on: ubuntu-latest | |
needs: tracking | |
if: github.ref == 'refs/heads/main' | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Download build artifacts | |
uses: actions/download-artifact@v3 | |
with: | |
name: process-build-artifacts | |
path: process/ | |
- name: Install PROCESS | |
run: pip install -e . | |
- name: Install dev dependencies | |
run: pip install -r requirements_dev.txt | |
- name: Install ford | |
run: pip install git+https://github.com/jonmaddock/ford | |
- run: ford documentation/ford/index.md | |
- name: Download ford project | |
uses: actions/download-artifact@v3 | |
with: | |
name: ford-artifact | |
path: build/ | |
- run: python scripts/document_fortran_interface.py | |
- run: python scripts/vardes.py | |
- run: git config --global --add safe.directory '*' | |
- run: mkdocs build | |
- run: mv ford_site site | |
- name: Download tracking html | |
uses: actions/download-artifact@v3 | |
with: | |
name: tracking-html | |
- run: mv tracking.html site || cp site/404.html site/tracking.html | |
- name: Upload documentation page | |
uses: actions/upload-pages-artifact@v1 | |
with: | |
path: site/ | |
- name: Deploy GitHub pages | |
id: deployment | |
uses: actions/deploy-pages@v2 |