Update README links to GitHub

README.md

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 # PROCESS
-PROCESS is the reactor systems code at [CCFE](www.ccfe.ac.uk). More information on PROCESS
-can be found on the PROCESS [webpage](https://ccfe.ukaea.uk/resources/process/).
+PROCESS is the reactor systems code at the [UK Atomic Energy Authority](https://ccfe.ukaea.uk/). More information on PROCESS can be found on the PROCESS [webpage](https://ccfe.ukaea.uk/resources/process/).
 
-PROCESS was originally a Fortran code, but is now Python-wrapped Fortran. In order to use PROCESS, the Fortran must be compiled and a Python-Fortran interface generated for the Python to import. Once built, it can be installed and run as a Python package.
+PROCESS was originally a Fortran code, but is currently a mixture of Python and Python-wrapped Fortran; the eventual aim is to have an entirely Python code base. In order to use PROCESS, the Fortran must be compiled and a Python-Fortran interface generated for the Python to import. Once built, it can be installed and run as a Python package.
 
 ## Getting Started
-Please see the [installation guide](http://process.gitpages.ccfe.ac.uk/process/installation) and the [usage guide](http://process.gitpages.ccfe.ac.uk/process/usage). Once installed, the `examples` directory provides Jupyter notebooks for interactively demonstrating usage of PROCESS, which is a good place to start. The `examples/README.md` provides more help.
+Please see the [installation guide](https://ukaea.github.io/PROCESS/installation/introduction/) and the [usage guide](https://ukaea.github.io/PROCESS/usage/running-process/). Once installed, the `examples` directory provides Jupyter notebooks for interactively demonstrating usage of PROCESS, which is a good place to start. The `examples/README.md` provides more help.
 
 ## Documentation
-To read about how the code works and the modules in it see the [documentation](http://process.gitpages.ccfe.ac.uk/process), which is hosted on Gitlab Pages.
+To read about how the code works and the modules in it see the [documentation](https://ukaea.github.io/PROCESS/).
 
 ## Tracking and Testing
 Process uses a mixture of tracking and testing to ensure code reliability. Tests are run on each branch and ensure the output of keys functions are correct. Tracking, on the other hand, shows graphs of a variables changes over time, and what commit caused the change.
 
-Our tracker can be found here: http://process.gitpages.ccfe.ac.uk/process/tracking.html
-Documentation on testing can be found here: http://process.gitpages.ccfe.ac.uk/process/development/testing/
+* Our tracker can be found here: https://ukaea.github.io/PROCESS/tracking.html
+* Documentation on testing can be found here: https://ukaea.github.io/PROCESS/development/testing/
 
 ## Development
-Please see the CONTRIBUTING.md for guidance on how to contribute to PROCESS. Further information is found in the development section of the [documentation](http://process.gitpages.ccfe.ac.uk/process).
+Please see the CONTRIBUTING.md for guidance on how to contribute to PROCESS. Further information is found in the development section of the [documentation](https://ukaea.github.io/PROCESS/).
 
 
 ## Publications
-A list of publications using PROCESS is given [here](http://process.gitpages.ccfe.ac.uk/process/publications), including two papers outlining the physics and engineering models in PROCESS.
+A list of publications using PROCESS is given [here](https://ukaea.github.io/PROCESS/publications), including two papers outlining the physics and engineering models in PROCESS.
 
 ## Contacts
 [James Morris](james.morris2@ukaea.uk)