Skip to content

Tools for analyzing trait evolution on phylogenetic trees with phenotypic ontologies

License

Notifications You must be signed in to change notification settings

uyedaj/rphenoscate

Repository files navigation

RPhenoscate: Semantics for Comparative Analyses of Trait Evolution

  • Authors: Diego Porto, Sergei Tarasov, Caleb Charpentier, Hilmar Lapp, Josef Uyeda

  • Maintainer: Josef Uyeda

  • Install rphenoscape and rphenoscate packages using devtools:

install.packages("remotes")
require(remotes)
remotes::install_github("phenoscape/rphenoscape")
remotes::install_github("uyedaj/rphenoscate", build_vignettes = TRUE)
  1. [Balhoff et al. 2010] https://doi.org/10.1371/journal.pone.0010500
  2. [Balhoff et al. 2014] http://dx.doi.org/10.1186/2041-1480-5-45
  3. [Dececchi et al. 2015] https://doi.org/10.1093/sysbio/syv031
  4. [Vogt 2017] https://doi.org/10.1111/cla.12209
  5. [Vogt 2018] https://doi.org/10.1111/cla.12195
  6. [Tarasov et al. 2019] https://doi.org/10.1093/isd/ixz009
  7. [Tarasov 2019] https://doi.org/10.1093/sysbio/syz005
  8. [Tarasov 2020] https://doi.org/10.1093/sysbio/syz050
  9. [Tarasov 2022] https://doi.org/10.1101/2021.04.26.441495

About

Tools for analyzing trait evolution on phylogenetic trees with phenotypic ontologies

Resources

License

Stars

Watchers

Forks

Packages

No packages published