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@neuropoly @sct-pipeline @spinalcordtoolbox @ivadomed @fMRI-laboratory-Olomouc

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valosekj/README.md

Hi there 👋

  • 🧠 I am a postdoctoral fellow at Polytechnique Montréal (NeuroPoly Lab) & Mila Québec AI Institute.

  • 🧲 My current research is focused on developing deep learning methods for spinal cord and lesion segmentation from MRI images.

  • 💻 As a member of the Spinal Cord Toolbox (SCT) team, I maintain and develop a free and open-source set of command-line tools dedicated to the processing and analysis of spinal cord MRI data.

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  1. spinalcordtoolbox/spinalcordtoolbox spinalcordtoolbox/spinalcordtoolbox Public

    Comprehensive and open-source library of analysis tools for MRI of the spinal cord.

    Python 200 101

  2. ivadomed/model_seg_sci ivadomed/model_seg_sci Public

    Deep-learning based segmentation of the spinal cord and intramedually lesions in traumatic and non-traumatic SCI

    Python 12 2

  3. ivadomed/model-spinal-rootlets ivadomed/model-spinal-rootlets Public

    Deep-learning based segmentation of the spinal nerve rootlets

    Jupyter Notebook 5 2

  4. spine-generic/spine-generic spine-generic/spine-generic Public

    Acquisition and Analysis Protocol for Quantitative MRI of the Spinal Cord

    Python 11 5

  5. PAM50-normalized-metrics-paper PAM50-normalized-metrics-paper Public

    A database of the healthy human spinal cord morphometry in the PAM50 template space

    Jupyter Notebook 2 4

  6. spinalcordtoolbox/manual-correction spinalcordtoolbox/manual-correction Public

    Scripts for the manual correction of spinal cord labels

    Python 4