Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

add --snarl-outlier option #4484

Open
wants to merge 1 commit into
base: master
Choose a base branch
from
Open

add --snarl-outlier option #4484

wants to merge 1 commit into from

Conversation

glennhickey
Copy link
Contributor

Changelog Entry

To be copied to the draft changelog by merger:

  • --snarl-outlier option added to vg stats -R to print most divergent haplotype from reference in each snarl. Can be used to speed up debugging by, ex, identifying unusual haplotypes in big SVs which could be candidate misassemblies.

Description

Opening this PR now so I don't forget about -- may change the interface a bit down the road though.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants