7753 update releasing 1.3.1 (#7788) #1
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# Jenkinsfile.monai-postmerge | |
name: deploy | |
on: | |
# full tests for all the important branches | |
push: | |
branches: | |
- main | |
- releasing/* | |
- feature/* | |
- dev | |
concurrency: | |
# automatically cancel the previously triggered workflows when there's a newer version | |
group: deploy-${{ github.event.pull_request.number || github.ref }} | |
cancel-in-progress: true | |
jobs: | |
# caching of these jobs: | |
# - docker-py3-pip- (shared) | |
# - ubuntu 37 38 39 310-pip- | |
# - os-latest-pip (shared) | |
coverage-py3: | |
# if: github.repository == 'Project-MONAI/MONAI' | |
if: ${{ false }} # disable self-hosted job project-monai/monai#7039 | |
container: | |
image: nvcr.io/nvidia/pytorch:22.04-py3 | |
options: --gpus all | |
runs-on: [self-hosted, linux, x64, integration] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: cache weekly timestamp | |
id: pip-cache | |
run: | | |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
- name: cache for pip | |
if: ${{ startsWith(github.ref, 'refs/heads/dev') }} | |
uses: actions/cache@v4 | |
id: cache | |
with: | |
path: | | |
~/.cache/pip | |
~/.cache/torch | |
key: docker-py3-pip-${{ steps.pip-cache.outputs.datew }} | |
- name: Install the dependencies | |
run: | | |
which python | |
python -m pip install --upgrade pip wheel | |
python -m pip install --upgrade torch torchvision | |
python -m pip install -r requirements-dev.txt | |
- name: Run unit tests report coverage | |
run: | | |
python -m pip list | |
git config --global --add safe.directory /__w/MONAI/MONAI | |
git clean -ffdx | |
df -h | |
# python -m pip cache info | |
nvidia-smi | |
export CUDA_VISIBLE_DEVICES=$(python -m tests.utils | tail -n 1) | |
echo $CUDA_VISIBLE_DEVICES | |
trap 'if pgrep python; then pkill python; fi;' ERR | |
python -c $'import torch\na,b=torch.zeros(1,device="cuda:0"),torch.zeros(1,device="cuda:1");\nwhile True:print(a,b)' > /dev/null & | |
python -c "import torch; print(torch.__version__); print('{} of GPUs available'.format(torch.cuda.device_count()))" | |
python -c 'import torch; print(torch.rand(5, 3, device=torch.device("cuda:0")))' | |
BUILD_MONAI=1 ./runtests.sh --build --coverage --unittests --disttests # unit tests with coverage report | |
BUILD_MONAI=1 ./runtests.sh --build --coverage --net # integration tests with coverage report | |
coverage xml --ignore-errors | |
if pgrep python; then pkill python; fi | |
shell: bash | |
- name: Upload coverage | |
uses: codecov/codecov-action@v4 | |
with: | |
fail_ci_if_error: false | |
files: ./coverage.xml | |
test-py3x: | |
runs-on: ubuntu-latest | |
strategy: | |
matrix: | |
python-version: ['3.8', '3.9', '3.10'] | |
steps: | |
- uses: actions/checkout@v4 | |
with: | |
fetch-depth: 0 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: cache weekly timestamp | |
id: pip-cache | |
run: | | |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
- name: cache for pip | |
uses: actions/cache@v4 | |
id: cache | |
with: | |
path: | | |
~/.cache/pip | |
~/.cache/torch | |
key: ${{ runner.os }}-${{ matrix.python-version }}-pip-${{ steps.pip-cache.outputs.datew }} | |
- name: Install the dependencies | |
run: | | |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \; | |
python -m pip install --upgrade pip wheel | |
python -m pip install -r requirements-dev.txt | |
- name: Run quick tests CPU ubuntu | |
run: | | |
python -m pip list | |
python -c 'import torch; print(torch.__version__); print(torch.rand(5,3))' | |
BUILD_MONAI=0 ./runtests.sh --build --quick --unittests | |
BUILD_MONAI=1 ./runtests.sh --build --quick --min | |
coverage xml --ignore-errors | |
- name: Upload coverage | |
uses: codecov/codecov-action@v4 | |
with: | |
fail_ci_if_error: false | |
files: ./coverage.xml | |
install: # pip install from github url, the default branch is dev | |
runs-on: ubuntu-latest | |
steps: | |
- name: Set up Python 3.8 | |
uses: actions/setup-python@v5 | |
with: | |
python-version: '3.8' | |
- name: cache weekly timestamp | |
id: pip-cache | |
run: | | |
echo "datew=$(date '+%Y-%V')" >> $GITHUB_OUTPUT | |
- name: cache for pip | |
uses: actions/cache@v4 | |
id: cache | |
with: | |
path: | | |
~/.cache/pip | |
~/.cache/torch | |
key: ${{ runner.os }}-pip-${{ steps.pip-cache.outputs.datew }} | |
- name: Install the default branch no build (dev branch only) | |
if: github.ref == 'refs/heads/dev' | |
run: | | |
BUILD_MONAI=0 pip install git+https://github.com/Project-MONAI/MONAI#egg=MONAI | |
python -c 'import monai; monai.config.print_config()' | |
cd $(python -c 'import monai; import os; print(os.path.dirname(monai.__file__))') | |
ls . | |
pip uninstall -y monai | |
- name: Install the default branch with build (dev branch only) | |
if: github.ref == 'refs/heads/dev' | |
run: | | |
find /opt/hostedtoolcache/* -maxdepth 0 ! -name 'Python' -exec rm -rf {} \; | |
BUILD_MONAI=1 pip install git+https://github.com/Project-MONAI/MONAI#egg=MONAI | |
python -c 'import monai; monai.config.print_config()' | |
- name: Get the test cases (dev branch only) | |
if: github.ref == 'refs/heads/dev' | |
uses: actions/checkout@v4 | |
with: | |
ref: dev | |
- name: Quick test installed (dev branch only) | |
if: github.ref == 'refs/heads/dev' | |
run: | | |
cd $GITHUB_WORKSPACE | |
rm -rf monai/ | |
ls -al . | |
python -m pip install -r requirements-min.txt | |
python -m tests.min_tests | |
env: | |
QUICKTEST: True |