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@virtool

Virtool

Viral infection diagnostics using next-generation sequencing
README.md

Getting Started

See the Virtool documentation to get started with the latest version of Virtool 4.

Versions

Virtool is currently undergoing a major transformation into a cloud-native application. This will mean Virtool can scale work across multiple hosts and run natively in Kubernetes and public cloud providers.

Virtool 4 series should be used for now. This version will continue to receive bug and security fixes for the forseeable future.

Virtool 5 and later will comprise multiple containerized services that need to run together. A deployment and migration guide will be provided.

Support

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  1. virtool virtool Public

    Viral infection diagnostics using next-generation sequencing

    Python 42 23

  2. virtool-ui virtool-ui Public

    The browser frontend for Virtool

    TypeScript 4 7

  3. virtool-workflow virtool-workflow Public

    A framework for building Virtool workflows

    Python 3 11

  4. virtool-core virtool-core Public

    Core utilities for Virtool and associated packages

    Python 3 10

Repositories

Showing 10 of 32 repositories
  • ref-builder Public

    Build and maintain reference sets of pathogen genome sequences.

    virtool/ref-builder’s past year of commit activity
    Python 2 1 0 5 Updated Sep 6, 2024
  • virtool-ui Public

    The browser frontend for Virtool

    virtool/virtool-ui’s past year of commit activity
    TypeScript 4 7 0 7 Updated Sep 5, 2024
  • virtool Public

    Viral infection diagnostics using next-generation sequencing

    virtool/virtool’s past year of commit activity
    Python 42 MIT 23 8 2 Updated Aug 30, 2024
  • virtool-operator Public

    A Helm chart and Kubernetes operator for keeping Virtool updated without downtime.

    virtool/virtool-operator’s past year of commit activity
    Go 1 MIT 1 0 0 Updated Aug 26, 2024
  • ref-plant-viruses Public

    An official Virtool reference for plant viruses

    virtool/ref-plant-viruses’s past year of commit activity
    1 MIT 3 6 0 Updated Aug 8, 2024
  • workflow-iimi Public

    A workflow for detecting known viruses using ML in Virtool

    virtool/workflow-iimi’s past year of commit activity
    HTML 1 1 0 0 Updated Jul 23, 2024
  • workflow-nuvs Public

    A workflow for identifying novel viruses in Virtool

    virtool/workflow-nuvs’s past year of commit activity
    Python 2 7 0 0 Updated Jul 23, 2024
  • workflow-pathoscope Public

    A workflow for detecting known viruses in Virtool

    virtool/workflow-pathoscope’s past year of commit activity
    Python 3 6 0 0 Updated Jul 23, 2024
  • workflow-build-index Public

    A workflow for building Virtool reference indexes

    virtool/workflow-build-index’s past year of commit activity
    Python 1 5 0 0 Updated Jul 23, 2024
  • workflow-create-subtraction Public

    A workflow for creating Virtool subtractions

    virtool/workflow-create-subtraction’s past year of commit activity
    Python 1 6 0 0 Updated Jul 23, 2024
View all repositories

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