This workflow is experimental.
An analysis workflow for detecting known OTUs (viruses) using read mapping and ML.
- Build all-OTU index. Build a Bowtie2 mapping index that includes all sequences in the ML model bundle.
- Map all OTUs. Map sample reads against all OTUs in the ML model bundle reference.
- Predict. Use Iimi (pre-release) to predict viral presence based on mappings.