adjusted dockerfile and removed failing deps

vivarium-collective · Jan 7, 2024 · 94629c4 · 94629c4
1 parent adbe15e
commit 94629c4
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Showing 4 changed files with 4 additions and 7 deletions.
diff --git a/Dockerfile b/Dockerfile
@@ -22,9 +22,6 @@ RUN wget https://download.opensuse.org/repositories/home:/dilawar/xUbuntu_22.04/
 # Install the downloaded package
 RUN dpkg -i smoldyn_2.64.4-1+2.1_amd64.deb
 
-# Set environment variables to avoid user interaction during package installation
-ENV DEBIAN_FRONTEND=noninteractive
-
 # Update package lists and install Python 3 and pip
 RUN apt-get update && apt-get install -y \
     python3 \

diff --git a/biosimulator_processes/tests/test_smoldyn.py b/biosimulator_processes/tests/test_smoldyn.py
@@ -1,4 +1,4 @@
-from process_bigraph import Composite, pf
+from process_bigraph import Composite
 # from biosimulator_processes.smoldyn_process import SmoldynProcess
 
 
@@ -53,7 +53,7 @@ def test_process():
 
     # gather results
     results = workflow.gather_results()
-    print(f'RESULTS: {pf(results)}')
+    print(f'RESULTS: {results}')
 
 
 # def manually_test_process():

diff --git a/scripts/run-docker.sh b/scripts/run-docker.sh
@@ -2,4 +2,4 @@
 docker buildx create --name biosimbuilder --use
 docker buildx inspect --bootstrap
 docker buildx build --platform linux/amd64 -t biosimulator-processes . \
-  && docker run biosimulator-processes
+  && docker run -it biosimulator-processes
diff --git a/setup.py b/setup.py
@@ -47,7 +47,7 @@
         "process-bigraph",
         "numpy",
         "pytest>=6.2.5",
-        # "tellurium",
+        "tellurium",
         "copasi-basico",
         "cobra"
     ],