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feat: update tests #14

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merged 34 commits into from
May 24, 2024
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695a263
chore: removed file
AlexPatrie May 18, 2024
c9cde43
feat: added examples to test_suite and refactored inside
AlexPatrie May 18, 2024
c0d4421
feat: added model source objects to test data model
AlexPatrie May 18, 2024
5214866
chore: added comments
AlexPatrie May 18, 2024
b1fbed8
feat: updated model extraction in temp notebook
AlexPatrie May 18, 2024
a9edad2
feat: updated model extraction method
AlexPatrie May 18, 2024
e092a42
feat: added rest_service to tests library
AlexPatrie May 18, 2024
d3ced8f
feat: refactored for service data model and methods
AlexPatrie May 18, 2024
80a7320
chore: updates
AlexPatrie May 18, 2024
8f859e8
feat: updates to test process methods
AlexPatrie May 18, 2024
135bf62
feat: updated poetry lock to include test suite for project
AlexPatrie May 18, 2024
86765f9
chore: updated pytest config for test suite
AlexPatrie May 18, 2024
5fead05
chore: update readme for pytest config
AlexPatrie May 18, 2024
5f22547
chore: several updates including biolab content
AlexPatrie May 20, 2024
04f0fca
chore: added release env to gitignore
AlexPatrie May 20, 2024
abe2565
feat: refactored biolab contents and data
AlexPatrie May 20, 2024
e4b1b2b
feat: updated bioloab content for open api setting
AlexPatrie May 20, 2024
9c632b4
chore: updates to readme
AlexPatrie May 20, 2024
3e3f81a
chore: added torch deps to biolab
AlexPatrie May 20, 2024
66e5ad1
chore: updated biolab lock for pytorch
AlexPatrie May 20, 2024
9eb9cc1
feat: updates to updated workflow type
AlexPatrie May 20, 2024
97572cd
updates
AlexPatrie May 20, 2024
69e372b
feat: added gpt generated model file
AlexPatrie May 20, 2024
85d25e4
feat: added second gpt gen model
AlexPatrie May 20, 2024
fac08d9
feat: updated rest service for hdf5 output
AlexPatrie May 20, 2024
9f6abab
feat: updated exec for verification
AlexPatrie May 20, 2024
c360ca0
feat: major update to verification
AlexPatrie May 20, 2024
71c2672
chore: savepoint update
AlexPatrie May 21, 2024
3a57b7e
chore: added ignore to removed lib
AlexPatrie May 21, 2024
9c39a70
chore: added notes
AlexPatrie May 21, 2024
8eddf47
chore: removed bio-lab in place for other repo
AlexPatrie May 21, 2024
02f04b6
updates
AlexPatrie May 21, 2024
53c7645
updated process devs
AlexPatrie May 24, 2024
8f2c255
updates
AlexPatrie May 24, 2024
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2 changes: 2 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -33,3 +33,5 @@ playground.ipynb
composer-notebooks/playground.ipynb
*model_dir/
commit.sh
test_env/
release_env
2 changes: 1 addition & 1 deletion Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ COPY ./biosimulator_processes /app/biosimulator_processes
COPY composer-notebooks /app/notebooks

# copy files
COPY ./pyproject.toml ./poetry.lock ./data ./scripts/trust-notebooks.sh /app/
COPY toml ./poetry.lock ./data ./scripts/trust-notebooks.sh /app/
COPY ./scripts/enter-lab.sh /usr/local/bin/enter-lab.sh
# COPY ./scripts/xvfb-startup.sh /xvfb-startup.sh

Expand Down
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -89,4 +89,4 @@ TODO: copy this from the prompter demo
### A NOTE FOR DEVELOPERS:
This tooling implements version control for dynamically-created composite containers through
`poetry`. The version control for content on the Python Package Index is performed by
`setup.py`.
`setup.py`. Also, the PyTest configuration resides within `./pyproject.toml` at the root of this repository.
File renamed without changes.
39 changes: 0 additions & 39 deletions biolab/__init__.py

This file was deleted.

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