TST: rewrite testing workflows around uv.lock

.github/dependabot.yml

@@ -3,15 +3,6 @@
 
 version: 2
 updates:
-- package-ecosystem: pip
-  directory: /requirements
-  schedule:
-    interval: monthly
-  groups:
-    actions:
-      patterns:
-      - '*'
-
 - package-ecosystem: github-actions
   directory: /.github/workflows
   schedule:

.github/workflows/bleeding-edge.yml

@@ -34,23 +34,15 @@ jobs:
       with:
         python-version: 3.13-dev
     - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0
-      with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/test_all.txt
-          **/pyproject.toml
-
-    - name: Build
+    - name: Configure uv
       run: |
-        uv venv
-        uv pip install numpy matplotlib scipy --pre --no-build --extra-index-url \
-          https://pypi.anaconda.org/scientific-python-nightly-wheels/simple
-        uv pip install .
-        uv pip install --requirement requirements/tests_all.txt
-
-    - run: uv pip list
+        echo "UV_PYTHON_PREFERENCE=only-system" >> $GITHUB_ENV
+        pin=${{ matrix.python-version }}
+        echo "UV_PYTHON=${pin%-dev}" >> $GITHUB_ENV
+        echo "UV_PRERELEASE=allow" >> $GITHUB_ENV
+        echo "UV_EXTRA_INDEX_URL=https://pypi.anaconda.org/scientific-python-nightly-wheels/simple" >> $GITHUB_ENV
 
     - name: Run pytest
       run: |
-        source .venv/bin/activate
-        pytest --color=yes -ra
+        uv run --no-editable --all-extras --group test \
+          pytest --color=yes

.github/workflows/ci.yml

@@ -27,68 +27,49 @@ jobs:
         - '3.11'
         - '3.12'
         - '3.13'
-        venv-loc: [bin]
+        label: ['']
         include:
         - os: ubuntu-20.04
           python-version: '3.9'
-          venv-loc: bin
-          deps: minimal
+          label: (oldest deps, mininmal)
           install-args: --resolution=lowest-direct
+        - os: ubuntu-20.04
+          python-version: '3.9'
+          label: (oldest deps, full)
+          install-args: --resolution=lowest-direct --all-extras --compile-bytecode
+        - os: ubuntu-latest
+          python-version: '3.13'
+          install-args: --all-extras
+          label: (full)
         - os: macos-latest
           python-version: '3.13'
-          venv-loc: bin
         - os: windows-latest
           python-version: '3.13'
-          venv-loc: Scripts
 
+    name: ${{ matrix.os }}-py${{ matrix.python-version }} ${{ matrix.label }}
     runs-on: ${{ matrix.os }}
-    env:
-      TEST_REQ_FILE: ${{ matrix.deps == 'minimal' && 'requirements/tests_min.txt' || 'requirements/tests_all.txt' }}
 
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Setup Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: ${{ matrix.python-version }}
     - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0
       with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/*.txt
-          **/pyproject.toml
-
-    # could in principle be done through uv sync but
-    # env resolution appears buggy as of uv 0.4.20
-    - run: |
-        uv venv
-        uv pip install . ${{ matrix.install-args }}
-
-    - name: Install test dependencies (UNIX)
-      if: matrix.os != 'windows-latest'
-      run: uv pip install --requirement $TEST_REQ_FILE
-
-    - name: Install test dependencies (Windows)
-      if: matrix.os == 'windows-latest'
-      run: uv pip install --requirement $env:TEST_REQ_FILE
-
-    - run: uv pip list
+        python-version: ${{ matrix.python-version }}
 
     - name: Run pytest
       shell: bash
       # could in principle be done through uv run coverage
       # but env resolution appears buggy as of uv 0.4.20
       run: |
-        source .venv/${{matrix.venv-loc}}/activate
-        coverage run --parallel-mode -m pytest --color=yes
+        uv run --no-editable --group covcheck ${{ matrix.install-args }} \
+          coverage run --parallel-mode -m pytest --color=yes
 
     - name: Upload coverage data
       # only using reports from ubuntu because
       # combining reports from multiple platforms is tricky (or impossible ?)
       if: startsWith(matrix.os, 'ubuntu')
       uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3
       with:
-        name: nonos_coverage_data-${{ matrix.os }}-${{ matrix.python-version }}
+        name: nonos_coverage_data-${{ matrix.os }}-${{ matrix.python-version }}${{ matrix.label }}
         path: .coverage.*
         if-no-files-found: ignore
         include-hidden-files: true
@@ -108,57 +89,39 @@ jobs:
 
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Setup Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: ${{ matrix.python-version }}
     - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0
       with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/typecheck.txt
-          **/pyproject.toml
+        python-version: ${{ matrix.python-version }}
 
-    - name: Run mypy
+    - name: Typecheck
       run: |
-        uvx --with-requirements=requirements/typecheck.txt --with . mypy nonos tests
+        uv run --frozen --no-editable --group typecheck mypy nonos tests
 
   image-tests:
     name: Image tests
     runs-on: ubuntu-latest
 
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
-    - name: Set up Python
-      uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
-      with:
-        python-version: 3.x
     - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0
       with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/tests_min.txt
-          **/pyproject.toml
-
-    - name: Build
-      run: |
-        uv sync
-        uv pip install --requirement requirements/tests_min.txt
+        python-version: '3.13'
 
-    - run: uv pip list
     - name: Run Image Tests
       run: |
-        uv run pytest --color=yes --mpl -m mpl_image_compare \
-               --mpl-generate-summary=html \
-               --mpl-results-path=nonos_pytest_mpl_results \
-               --mpl-baseline-path=tests/pytest_mpl_baseline
+        uv run --frozen --no-editable --group test \
+          pytest --color=yes --mpl -m mpl_image_compare \
+            --mpl-generate-summary=html \
+            --mpl-results-path=nonos_pytest_mpl_results \
+            --mpl-baseline-path=tests/pytest_mpl_baseline
 
     - name: Generate new image baseline
       if: failure()
       run: |
-        uv run pytest --color=yes --mpl -m mpl_image_compare \
-               --mpl-generate-path=nonos_pytest_mpl_new_baseline \
-               --last-failed
+        uv run --frozen --no-editable --group test \
+          pytest --color=yes --mpl -m mpl_image_compare \
+            --mpl-generate-path=nonos_pytest_mpl_new_baseline \
+            --last-failed
 
     # always attempt to upload artifacts, even
     # (and especially) in case of failure.
@@ -185,9 +148,11 @@ jobs:
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
     - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0
+      with:
+        # Use latest Python, so it understands all syntax.
+        python-version: '3.13'
 
-    # Use latest Python, so it understands all syntax.
-    - run: uv tool install --python 3.13 coverage
+    - run: uv tool install coverage
 
     - uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 # v4.1.8
       with:
@@ -218,15 +183,9 @@ jobs:
     steps:
     - uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
     - uses: astral-sh/setup-uv@38f3f104447c67c051c4a08e39b64a148898af3a # v4.2.0
-      with:
-        enable-cache: true
-        cache-dependency-glob: |
-          **/requirements/docs.txt
-          **/pyproject.toml
-
     - name: Build
       run: |
-        uvx --with-requirements=requirements/docs.txt mkdocs build
+        uvx --with-requirements=docs/requirements.txt mkdocs build
     - name: Upload artifacts
       uses: actions/upload-artifact@b4b15b8c7c6ac21ea08fcf65892d2ee8f75cf882 # v4.4.3
       with:

.pre-commit-config.yaml

@@ -13,6 +13,11 @@ repos:
   - id: end-of-file-fixer
   - id: check-toml
 
+- repo: https://github.com/astral-sh/uv-pre-commit
+  rev: 0.5.8
+  hooks:
+  - id: uv-lock
+
 - repo: https://github.com/crate-ci/typos
   rev: v1.26.0
   hooks:

.readthedocs.yaml

@@ -19,4 +19,4 @@ mkdocs:
 # Optionally declare the Python requirements required to build your docs
 python:
   install:
-  - requirements: requirements/docs.txt
+  - requirements: docs/requirements.txt

docs/requirements.txt

@@ -0,0 +1,109 @@
+# This file was autogenerated by uv via the following command:
+#    uv pip compile docs/requirements.in
+babel==2.16.0
+    # via mkdocs-material
+bracex==2.5.post1
+    # via wcmatch
+certifi==2024.12.14
+    # via requests
+charset-normalizer==3.4.0
+    # via requests
+click==8.1.7
+    # via
+    #   mkdocs
+    #   mkdocstrings
+colorama==0.4.6
+    # via
+    #   griffe
+    #   mkdocs-material
+ghp-import==2.1.0
+    # via mkdocs
+griffe==1.5.1
+    # via mkdocstrings-python
+idna==3.10
+    # via requests
+jinja2==3.1.4
+    # via
+    #   mkdocs
+    #   mkdocs-material
+    #   mkdocstrings
+markdown==3.7
+    # via
+    #   mkdocs
+    #   mkdocs-autorefs
+    #   mkdocs-material
+    #   mkdocstrings
+    #   pymdown-extensions
+markupsafe==3.0.2
+    # via
+    #   jinja2
+    #   mkdocs
+    #   mkdocs-autorefs
+    #   mkdocstrings
+mergedeep==1.3.4
+    # via
+    #   mkdocs
+    #   mkdocs-get-deps
+mkdocs==1.6.1
+    # via
+    #   -r docs/requirements.in
+    #   mkdocs-autorefs
+    #   mkdocs-include-markdown-plugin
+    #   mkdocs-material
+    #   mkdocstrings
+mkdocs-autorefs==1.2.0
+    # via
+    #   mkdocstrings
+    #   mkdocstrings-python
+mkdocs-get-deps==0.2.0
+    # via mkdocs
+mkdocs-include-markdown-plugin==7.1.2
+    # via -r docs/requirements.in
+mkdocs-material==9.5.47
+    # via -r docs/requirements.in
+mkdocs-material-extensions==1.3.1
+    # via mkdocs-material
+mkdocstrings==0.27.0
+    # via
+    #   -r docs/requirements.in
+    #   mkdocstrings-python
+mkdocstrings-python==1.12.2
+    # via mkdocstrings
+packaging==24.2
+    # via mkdocs
+paginate==0.5.7
+    # via mkdocs-material
+pathspec==0.12.1
+    # via mkdocs
+platformdirs==4.3.6
+    # via
+    #   mkdocs-get-deps
+    #   mkdocstrings
+pygments==2.18.0
+    # via mkdocs-material
+pymdown-extensions==10.12
+    # via
+    #   mkdocs-material
+    #   mkdocstrings
+python-dateutil==2.9.0.post0
+    # via ghp-import
+pyyaml==6.0.2
+    # via
+    #   mkdocs
+    #   mkdocs-get-deps
+    #   pymdown-extensions
+    #   pyyaml-env-tag
+pyyaml-env-tag==0.1
+    # via mkdocs
+regex==2024.11.6
+    # via mkdocs-material
+requests==2.32.3
+    # via mkdocs-material
+six==1.17.0
+    # via python-dateutil
+urllib3==2.2.3
+    # via requests
+watchdog==6.0.0
+    # via mkdocs
+wcmatch==10.0
+    # via mkdocs-include-markdown-plugin