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@vpc-ccg

Hach Lab for Computational Cancer Genomics

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  1. tksm Public

    Very modular, very cool long-read transcriptomic simulator

    C++ 5

  2. freddie Public

    Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing

    Python 17 3

  3. genion Public

    GENe fusION

    C++ 7 1

  4. scTagger Public

    10x single cell short- and long-read RNA sequencing

    Python 11

  5. circminer Public

    A sensitive and fast tool for circular RNA detection from RNA-Seq data

    C++ 10 4

  6. calib Public

    Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

    HTML 38 9

Repositories

Showing 10 of 15 repositories
  • svict Public

    Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA

    C++ 25 BSD-3-Clause 6 14 0 Updated Jun 6, 2024
  • tksm Public

    Very modular, very cool long-read transcriptomic simulator

    C++ 5 MIT 0 4 1 Updated May 13, 2024
  • scTagger Public

    10x single cell short- and long-read RNA sequencing

    Python 11 MIT 0 1 0 Updated Jan 17, 2024
  • calib Public

    Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.

    HTML 38 MIT 9 3 0 Updated Jun 6, 2023
  • genion Public

    GENe fusION

    C++ 7 MIT 1 2 0 Updated Jun 6, 2023
  • freddie Public

    Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing

    Python 17 MIT 3 3 0 Updated Nov 29, 2022
  • sedef Public

    Identification of segmental duplications in the genome

    C++ 26 MIT 8 0 0 Updated Mar 1, 2022
  • LTR-sim Public

    Long transcriptomic reads simulator

    Python 0 MIT 0 0 0 Updated Sep 13, 2021
  • circminer Public

    A sensitive and fast tool for circular RNA detection from RNA-Seq data

    C++ 10 GPL-3.0 4 4 0 Updated May 4, 2021
  • C++ 1 MIT 0 0 0 Updated Mar 24, 2021

People

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