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mokapot v0.10.0

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@wfondrie wfondrie released this 11 Sep 18:50
· 4 commits to main since this release
v0.10.0
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Learn about vigilant mode.

[v0.10.0] - 2023-09-11

Breaking changes

  • Mokapot now uses numpy.random.Generator instead of the deprecated numpy.random.RandomState API.
    New rng arguments have been added to functions and classes that rely on randomness in lieu of setting a global random seed with np.random.seed(). Thanks @sjust-seerbio! (#55)

Changed

  • Added linting with Ruff to tests and pre-commit hooks (along with others)!

Fixed

  • The PepXML reader, which broke due to a Pandas update.
  • Potential bug if lowercase peptide sequences were used and protein-level confidence estimates were enabled
  • Multiprocessing led to the same training set being used for all splits (#104).

Contributors

sjust-seerbio
Assets 2
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