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Added
--keep_decoys option to the command line interface. Thanks @jspaezp!
Notes about setting a random seed to the Python API documentation. (Issue #30)
Added more information about peptides that couldn't be mapped to proteins. (Issue #29)
Fixed
Loading a saved model with mokapot.load_model() would fail because of an
update to Pandas that introduced a new exception. We've updated mokapot
accordingly.
Changed
Updates to unit tests. Warnings are now treated as errors for system tests.