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  1. SampleQC SampleQC Public

    Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data

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  2. psupertime psupertime Public

    psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels

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  3. TreeTop TreeTop Public

    TreeTop is an algorithm for single-cell data analysis to identify and assess statistical significance of branch points in biological processes with possibly multi-level branching hierarchies. We de…

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  4. psupplementary psupplementary Public

    Supplementary data and analyses for the package psupertime

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  5. TreeTop_data TreeTop_data Public

    Example data for package TreeTop

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  6. muscat muscat Public

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    Multi-sample multi-group scRNA-seq analysis tools

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