- use the conda environment by
conda env create --prefix=edit -f environment.yml
conda activate edit
- or install these tools and add them to system path
samtools
bwa
freebayes
svaba
cd test/
sh test.sh
python map_variant.py -h
-
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Identify variants (snv, indel, sv) by mapping reads onto the reference.
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wshuai294/Bacteria-Variant
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Identify variants (snv, indel, sv) by mapping reads onto the reference.
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