Pydicom compatibility (#149)

* Update requirements.yml * Update requirements.yml * Replace depreciated pydcm functions
wtclarke · Sep 23, 2024 · 54dff62 · 54dff62
1 parent 9fcc0af
commit 54dff62
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diff --git a/requirements.yml b/requirements.yml
@@ -1,7 +1,8 @@
 dependencies:
  - numpy>=1.26
  - nibabel
- - pydicom
+ - pydicom==3.*;python_version>="3.10"
+ - pydicom==2.4.*;python_version<"3.10"
  - pyMapVBVD>=0.6.0
  - scipy==1.13.*
  - brukerapi>=0.1.8

diff --git a/spec2nii/spec2nii.py b/spec2nii/spec2nii.py
@@ -467,9 +467,9 @@ def auto(self, args):
                         sorted(args.file.rglob('*.IMA')) + \
                         sorted(args.file.rglob('*.ima')) + \
                         sorted(args.file.rglob('*.dcm'))
-                    file = pdcm.read_file(files_in[0])
+                    file = pdcm.dcmread(files_in[0])
                 else:
-                    file = pdcm.read_file(args.file)
+                    file = pdcm.dcmread(args.file)
 
                 manufacturer = file.Manufacturer
                 setattr(args, 'tag', None)