pll_set_tip_clv now accepts a parameter indicating whether input arra…

…y is padded
xflouris · May 12, 2017 · dba4e07 · dba4e07
1 parent 9ebcb41
commit dba4e07
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Showing 2 changed files with 8 additions and 3 deletions.
diff --git a/src/pll.c b/src/pll.c
@@ -988,7 +988,8 @@ PLL_EXPORT int pll_set_tip_states(pll_partition_t * partition,
 //TODO: <DOC> We should account for padding before calling this function
 PLL_EXPORT int pll_set_tip_clv(pll_partition_t * partition,
                                unsigned int tip_index,
-                               const double * clv)
+                               const double * clv,
+                               int padding)
 {
   unsigned int i,j,k;
 
@@ -1009,7 +1010,7 @@ PLL_EXPORT int pll_set_tip_clv(pll_partition_t * partition,
       memcpy(tipclv, clv, partition->states*sizeof(double));
       tipclv += partition->states_padded;
     }
-    clv += partition->states_padded;
+    clv += padding ? partition->states_padded : partition->states;
   }
 
   /* if asc_bias is set, we initialize the additional positions */

diff --git a/src/pll.h b/src/pll.h
@@ -55,6 +55,9 @@
 #define PLL_FAILURE  0
 #define PLL_SUCCESS  1
 
+#define PLL_FALSE  0
+#define PLL_TRUE   1
+
 #define PLL_ALIGNMENT_CPU   8
 #define PLL_ALIGNMENT_SSE  16
 #define PLL_ALIGNMENT_AVX  32
@@ -505,7 +508,8 @@ PLL_EXPORT int pll_set_tip_states(pll_partition_t * partition,
 
 PLL_EXPORT int pll_set_tip_clv(pll_partition_t * partition,
                                unsigned int tip_index,
-                               const double * clv);
+                               const double * clv,
+                               int padding);
 
 PLL_EXPORT void pll_set_pattern_weights(pll_partition_t * partition,
                                         const unsigned int * pattern_weights);