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xryanglab

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  1. RiboCode RiboCode Public

    release version

    Python 48 15

  2. xtail xtail Public

    Genome-wide assessment of differential translations with ribosome profiling data

    R 18 18

  3. DeepLinc DeepLinc Public

    De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data

    Python 15 7

  4. RiboMiner RiboMiner Public

    a toolset for mining multi-dimensional features of the translatome with ribosome profiling data

    Python 14 8

  5. SCASL SCASL Public

    single-cell clustering based on alternative splicing landscapes

    Python 14 3

  6. ORFcalling ORFcalling Public

    A tutorial review of some methods for ORF calling

    Python 4 3

Repositories

Showing 9 of 9 repositories
  • RiboMiner Public

    a toolset for mining multi-dimensional features of the translatome with ribosome profiling data

    xryanglab/RiboMiner’s past year of commit activity
    Python 14 GPL-3.0 8 0 0 Updated Jun 28, 2024
  • SCASL Public

    single-cell clustering based on alternative splicing landscapes

    xryanglab/SCASL’s past year of commit activity
    Python 14 Apache-2.0 3 7 0 Updated Mar 20, 2024
  • RocA Public

    Reanalysis of ribosome profiling datasets reveals a novel function of rocaglamide A in perturbing the dynamics of translation elongation via eIF4A

    xryanglab/RocA’s past year of commit activity
    Python 1 GPL-3.0 1 0 0 Updated Dec 28, 2022
  • DeepLinc Public

    De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data

    xryanglab/DeepLinc’s past year of commit activity
    Python 15 MIT 7 5 0 Updated Oct 11, 2022
  • RiboCode Public

    release version

    xryanglab/RiboCode’s past year of commit activity
    Python 48 MIT 15 33 (4 issues need help) 0 Updated Jul 29, 2022
  • xtail Public

    Genome-wide assessment of differential translations with ribosome profiling data

    xryanglab/xtail’s past year of commit activity
    R 18 GPL-3.0 18 18 0 Updated Apr 7, 2022
  • cscMap Public

    cscMap is a bioinformatics pipeline to search for the RNA chimeras resulted from fusions of the transcripts encoded by the two opposite DNA strands.

    xryanglab/cscMap’s past year of commit activity
    Python 4 3 4 0 Updated Jun 23, 2021
  • RPF-count-CDS Public Forked from zhengtaoxiao/RPF-count-CDS

    Counting the RPF reads map to CDS region

    xryanglab/RPF-count-CDS’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Feb 17, 2020
  • ORFcalling Public

    A tutorial review of some methods for ORF calling

    xryanglab/ORFcalling’s past year of commit activity
    Python 4 GPL-3.0 3 0 0 Updated Dec 14, 2017

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