Tests

Make "yadm clone --recursive" work as expected. #561

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Run time

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Job	Run time
Tests (ubuntu-20.04)	2m 21s
Tests (ubuntu-24.04)	2m 22s
Tests (macos-13)	4m 35s
Tests (macos-15)	2m 30s
Tests (windows-2022)	4m 51s
	16m 39s