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typhoidgenomics/TyphiNET
typhoidgenomics/TyphiNET PublicTyphiNET online Salmonella Typhi AMR surveillance dashboard.
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GenoParatyphi
GenoParatyphi PublicDetect AMR mutations in Salmonella Paratyphi A genomes based on VCF or BAM files (mapped to Paratyphi A AKU_12601 reference genome)
Python
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SNV_plotter
SNV_plotter PublicPlots the distribution of heterozygous and homozygous SNV calls from RedDog output
R
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typhoidgenomics/genotyphi
typhoidgenomics/genotyphi PublicAssign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)
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SNV_Stats_Generator
SNV_Stats_Generator PublicSNV Quality Stats Generator provides summaries of high and low quality SNV calls from the GHRU mapping pipeline
R
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OTUStalker
OTUStalker PublicOTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, …
Java
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If the problem persists, check the GitHub status page or contact support.