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R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

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gTrack

R package for plotting tracks of 1D and 2D genomic data stored in GenomicRanges, common UCSC formats, ffTrack.

License: GNU GPLv3

Installation

## allows dependencies that throw warnings to install
Sys.setenv(R_REMOTES_NO_ERRORS_FROM_WARNINGS = TRUE) 

## install with devtools
devtools::install_github('mskilab/gTrack)

See documentation

Read the docs R Documentation

Tutorial

Attributions

Marcin Imielinski - Assistant Professor, Weill-Cornell Medical College. Developed while a fellow in the Matthew Meyerson Lab, Dana Farber Cancer Institute, Broad Institute

Jeremiah Wala - Harvard MD-PhD candidate, Bioinformatics and Integrative Genomics, Rameen Beroukhim Lab, Dana Farber Cancer Institute

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R package for visualizing complex and multi-track 1D and 2D genomic data in GenomicRanges framework

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  • R 91.3%
  • Python 3.3%
  • Makefile 2.8%
  • Batchfile 2.6%