Skip to content
@AllenNeuralDynamics

Allen Institute for Neural Dynamics

we're hiring: https://alleninstitute.org/careers/

Popular repositories Loading

  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 23 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    Code Ocean pipeline for processing extracellula electrophysiology data

    Nextflow 7 2

  4. parallax parallax Public

    GUI control software for the Modular Insertion System (MIS)

    Python 5 1

  5. TigerASI TigerASI Public

    a lightweight python interface for ASI brand Tiger Controllers

    Python 5 2

  6. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentatio…

    Python 5

Repositories

Showing 10 of 283 repositories
  • Aind.Behavior.ExperimentLauncher Public

    Source for for a minimal framework that can be used to build experimental interfaces

    AllenNeuralDynamics/Aind.Behavior.ExperimentLauncher’s past year of commit activity
    Python 0 MIT 0 5 0 Updated Nov 17, 2024
  • Aind.Behavior.Services Public
    AllenNeuralDynamics/Aind.Behavior.Services’s past year of commit activity
    C# 0 MIT 0 12 (1 issue needs help) 0 Updated Nov 17, 2024
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 135 (1 issue needs help) 2 Updated Nov 17, 2024
  • Aind.Behavior.CoreAnalysis Public

    A repository with core primitives for analysis shared across `Aind.Behavior` tasks

    AllenNeuralDynamics/Aind.Behavior.CoreAnalysis’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Nov 17, 2024
  • aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    AllenNeuralDynamics/aind-data-schema’s past year of commit activity
    Python 23 MIT 17 33 7 Updated Nov 17, 2024
  • aind-data-schema-models Public

    Data models used in aind-data-schema

    AllenNeuralDynamics/aind-data-schema-models’s past year of commit activity
    Python 0 MIT 1 6 1 Updated Nov 17, 2024
  • Aind.Behavior.VideoEncodingBenchmarks Public

    A repository with code for benchmarking online video acquisition/encoding pipelines

    AllenNeuralDynamics/Aind.Behavior.VideoEncodingBenchmarks’s past year of commit activity
    C# 0 MIT 0 2 0 Updated Nov 17, 2024
  • Aind.Behavior.VrForaging Public

    Task implemention of VR Foraging experiment

    AllenNeuralDynamics/Aind.Behavior.VrForaging’s past year of commit activity
    C# 2 MIT 0 16 1 Updated Nov 16, 2024
  • Aind.Behavior.ForceForaging Public

    A repository for the aind-force-foraging experiment

    AllenNeuralDynamics/Aind.Behavior.ForceForaging’s past year of commit activity
    C# 1 MIT 0 8 1 Updated Nov 16, 2024
  • Aind.Behavior.Telekinesis Public

    Task implemention of brain-computer interface experiments

    AllenNeuralDynamics/Aind.Behavior.Telekinesis’s past year of commit activity
    C# 0 MIT 0 1 0 Updated Nov 16, 2024
View all repositories