Repositories list

• foraging-behavior-browser

  Public
  Foraging behavior browser (streamlit)

  Python

  •

  MIT License

  •2•2•15•0•Updated Dec 24, 2024Dec 24, 2024

• dynamic-foraging-task

  Public
  Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

  Python

  •

  MIT License

  •4•6•190•5•Updated Dec 24, 2024Dec 24, 2024

• aind-foraging-behavior-bonsai-trigger-pipeline

  Public
  Python

  •

  MIT License

  •0•1•1•0•Updated Dec 24, 2024Dec 24, 2024

• aind-slims-api

  Public
  AIND-specific access to data stored in SLIMS

  Python

  •

  MIT License

  •1•0•5•2•Updated Dec 24, 2024Dec 24, 2024

• aind-ophys-extraction-suite2p

  Public
  Combines cellpose and suite2p to extract sources, i.e. ROIs and their traces.

  Python

  •

  MIT License

  •0•0•3•1•Updated Dec 24, 2024Dec 24, 2024

• dynamicrouting-duplicate-probe-info

  Public
  Scan S3 for ecephys data dirs with duplicate probe data (recorded on two Record Nodes) and get info on paths that need correcting.

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 24, 2024Dec 24, 2024

• aind-ophys-motion-correction

  Public
  Python

  •

  MIT License

  •0•1•14•1•Updated Dec 23, 2024Dec 23, 2024

• aind-watchdog-service

  Public
  Data staging service that prepares acquistion data for cloud upload to Amazon S3 and Code Ocean processing.

  Python

  •

  MIT License

  •1•2•14•1•Updated Dec 23, 2024Dec 23, 2024

• view

  Public
  Model/View for exa-spim

  Python

  •3•4•11•1•Updated Dec 23, 2024Dec 23, 2024

• ROICaT

  Public
  Region Of Interest Classification and Tracking

  Python

  •

  GNU General Public License v3.0

  •7•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• aind-ccf-registration

  Public
  Python

  •

  MIT License

  •4•3•6•0•Updated Dec 23, 2024Dec 23, 2024

• aind-ophys-oasis-event-detection

  Public
  Python

  •

  MIT License

  •0•0•0•1•Updated Dec 23, 2024Dec 23, 2024

• aind-ophys-dff

  Public
  Python

  •

  MIT License

  •0•0•0•1•Updated Dec 23, 2024Dec 23, 2024

• aind-ophys-decrosstalk-roi-images

  Public
  Python

  •

  MIT License

  •0•0•12•1•Updated Dec 23, 2024Dec 23, 2024

• aind-ephys-processing-qc

  Public
  CodeOcean Capsule for ephys quality control

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• aind-data-transfer-service

  Public
  FastAPI service to run data compression and transfer jobs on the hpc

  aind-core-servicesaind-deploy-services

  Python

  •

  MIT License

  •0•2•12•0•Updated Dec 23, 2024Dec 23, 2024

• aind-exaspim-soma-detection

  Public
  Jupyter Notebook

  •

  MIT License

  •0•1•0•0•Updated Dec 23, 2024Dec 23, 2024

• aind-metadata-service

  Public
  Service to retrieve Labtracks/Sharepoint info using a REST API

  aind-core-servicesaind-deploy-services

  Python

  •

  MIT License

  •1•3•19•0•Updated Dec 23, 2024Dec 23, 2024

• aind-behavior-curriculum

  Public
  Starter repository for behavior base primitives.

  Python

  •

  MIT License

  •0•0•17•6•Updated Dec 23, 2024Dec 23, 2024

• aind-ephys-job-dispatch

  Public
  Capsule to dispatch ephys jobs in CO pipeline

  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 23, 2024Dec 23, 2024

• dynamicrouting-decoding

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 21, 2024Dec 21, 2024

• aind-morphology-utils

  Public
  Python

  •

  MIT License

  •0•0•1•3•Updated Dec 20, 2024Dec 20, 2024

• aind-fip-qc-raw

  Public
  a capsule to generate QC based on fip raw data asest

  Python

  •

  MIT License

  •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• aind-fip-dff

  Public
  This capsule takes an input raw NWB file of fiber data and creates processed DFF traces

  Python

  •

  MIT License

  •0•0•4•0•Updated Dec 20, 2024Dec 20, 2024

• aind-multiplane-ophys-pipeline-without-splitting

  Public
  Nextflow

  •

  MIT License

  •0•0•1•0•Updated Dec 20, 2024Dec 20, 2024

• aind-ophys-classifier

  Public
  Python

  •

  MIT License

  •0•0•0•0•Updated Dec 20, 2024Dec 20, 2024

• Aind.Behavior.ExperimentLauncher

  Public
  Source for for a minimal framework that can be used to build experimental interfaces

  aind-behavior

  Python

  •

  MIT License

  •0•0•9•1•Updated Dec 20, 2024Dec 20, 2024

• Aind.Behavior.Services

  Public
  A repository containing code for data acquisition and processing for AIND behavior rigs.

  aind-behavior

  C#

  •

  MIT License

  •0•0•11•2•Updated Dec 20, 2024Dec 20, 2024

• Aind.Behavior.CurriculumTemplate

  Public
  A template of a repository to be used for defining, running and interfacing with a behavior curriculum

  aind-behavior

  Python

  •

  MIT License

  •0•0•2•0•Updated Dec 20, 2024Dec 20, 2024

• aind-multiplane-ophys-pipeline

  Public
  Nextflow

  •

  MIT License

  •0•0•3•0•Updated Dec 20, 2024Dec 20, 2024