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Creates an Imaris spots object from x,y,z-positions in a CSV file. The spots size is determined by the user. Positions must be within the image boundary, for example, no negative values. Additionally, the extension assumes three lines of header information in the CSV file, therefore the first three lines will be skipped.

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BIDCatUCSF/Create-Spots-From-Text

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Create-Spots-From-Text

Description:

Creates an Imaris spots object from x,y,z-positions in a CSV file. The spots size is determined by the user.
Positions must be within the image boundary, for example, no negative values. Additionally, remove all headers 
and whitespace from CSV file.The CSV document should only contain x,y,z-position data.

Dependencies:

Matlab 2015 or newer  
Imaris     

Installation:

Copy the 'createSpotsFromCSV.m' file into your Imaris XT Matlab directory.           
Select the 'Tools' Icon in Imaris.     
From the list of extentions choose 'Create Spots from CSV.'     
From the pop up dialog window, input the desired spot size.    
Click 'Ok'    

About

Creates an Imaris spots object from x,y,z-positions in a CSV file. The spots size is determined by the user. Positions must be within the image boundary, for example, no negative values. Additionally, the extension assumes three lines of header information in the CSV file, therefore the first three lines will be skipped.

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