This repository contains the code and data used in the manuscript published in Biotropica based on EB's 2022 Presidential Plenary talk.
To reproduce the analyses and paper (including figures and tables) carry out the following steps:
- Run the script
code/ms_data_prep.R.
This script pulls the complete data set of keywords and title bigrams from the 'Tropical Bibliometrics' repository and save it in a folder called data/data_original. It will also pull two functions necessary to 'clean' the data for analysis (keywords_depluralizer.R, keyword_editor.R) from the same repository and save them in the code folder. The 'clean' data used for all analyses, figures, and tables in this manuscript are then saved in the folder data/data_ms.
- Open and knit the file
Bruna_plenary_MS.Rmd.
Knitting the file will import the 'clean' data, carry out all calculations presented in the paper (e.g., number of articles in each article category, number of terms in each category) using the embedded R code chunks, and generate the figures and tables. Figures are generated using two functions found in the code folder (plot_bigrams_bar.R, plot_kw_bar.R). There is no need to open and render the bruna_supplement.Rmd file -- it is automatically knit and included in the .pdf file of the paper when rendering Bruna_plenary_MS.Rm.
If you use these data in your own manuscript, please be sure to cite both the Biotropica and the dataset:
Emilio M. Bruna. (2024). Code and Data for Bruna 2024 Biotropica (v1.0). Zenodo. https://doi.org/10.5281/zenodo.13821266
