Retrieve the VCF file with the taxonomy id included. This should be b…

…ackward compatible
EBIvariation · Jan 8, 2024 · 3b3869c · 3b3869c
1 parent 846cf28
commit 3b3869c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/eva_submission/nextflow/remap_and_cluster.nf b/eva_submission/nextflow/remap_and_cluster.nf
@@ -127,7 +127,7 @@ process extract_vcf_from_mongo {
 
     output:
     // Only pass on the EVA vcf, dbSNP one will be empty
-    tuple val(source_assembly_accession), path(source_fasta), path("${source_assembly_accession}_eva.vcf"), emit: source_vcfs
+    tuple val(source_assembly_accession), path(source_fasta), path("${source_assembly_accession}*_eva.vcf"), emit: source_vcfs
     path "${source_assembly_accession}_vcf_extractor.log", emit: log_filename
 
     publishDir "$params.logs_dir", overwrite: true, mode: "copy", pattern: "*.log*"