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EVA-3308 - extract VCF file with taxonomy id #194

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Jan 15, 2024
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EVA-3308 - extract VCF file with taxonomy id #194

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2 changes: 1 addition & 1 deletion eva_submission/nextflow/remap_and_cluster.nf
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Original file line number Diff line number Diff line change
Expand Up @@ -127,7 +127,7 @@ process extract_vcf_from_mongo {

output:
// Only pass on the EVA vcf, dbSNP one will be empty
tuple val(source_assembly_accession), path(source_fasta), path("${source_assembly_accession}_eva.vcf"), emit: source_vcfs
tuple val(source_assembly_accession), path(source_fasta), path("${source_assembly_accession}*_eva.vcf"), emit: source_vcfs
path "${source_assembly_accession}_vcf_extractor.log", emit: log_filename

publishDir "$params.logs_dir", overwrite: true, mode: "copy", pattern: "*.log*"
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