Merge pull request #10 from tcezard/independent_merge_per_group

Make multiple workflow independent
EBIvariation · Jul 27, 2022 · 2b20642 · 2b20642
2 parents 5be6c66 + 31b47b4
commit 2b20642
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diff --git a/eva_vcf_merge/merge.py b/eva_vcf_merge/merge.py
@@ -104,7 +104,7 @@ def generate_merge_pipeline(self, merge_type, vcf_groups, chunk_size):
                     process_command=self.concat_command
                 )
             pipeline = NextFlowPipeline.join_pipelines(compress_pipeline, merge_pipeline)
-            full_pipeline = NextFlowPipeline.join_pipelines(full_pipeline, pipeline)
+            full_pipeline = NextFlowPipeline.join_pipelines(full_pipeline, pipeline, with_dependencies=False)
             merged_filenames[alias] = merged_filename
         return full_pipeline, merged_filenames
 

diff --git a/requirements.txt b/requirements.txt
@@ -1,3 +1,3 @@
-ebi_eva_common_pyutils>=0.3.15
+ebi_eva_common_pyutils>=0.3.22
 pysam~=0.16
 pytest~=6.2