Update variant_remapping_tools/reads_to_remapped_variants.py

Co-authored-by: April Shen <april.tuesday@gmail.com>
EBIvariation · Aug 23, 2021 · bc3661f · bc3661f
1 parent 82359ae
commit bc3661f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/variant_remapping_tools/reads_to_remapped_variants.py b/variant_remapping_tools/reads_to_remapped_variants.py
@@ -29,7 +29,7 @@ def calculate_new_variant_definition(left_read, right_read, ref_fasta, original_
                           right_read.reference_start - left_read.reference_end).upper()
 
     if len(set(new_ref).difference(nucleotide_alphabet)) != 0 :
-        failure_reason = 'Reference Allele not in non ACGT'
+        failure_reason = 'Reference Allele not in ACGT'
 
     new_pos = left_read.reference_end + 1