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Remove failed tests with colon
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@tcezard
tcezard committed Jun 14, 2024
1 parent 512635a commit 42dee1f
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Showing 10 changed files with 14 additions and 26 deletions.
4 changes: 2 additions & 2 deletions test/input_files/v4.1/failed/failed_body_chrom_001.vcf
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##fileformat=VCFv4.1
##CauseOfFailure=contig ID contains a colon
##CauseOfFailure=contig ID contains a whitespace
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
chr:1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
chr 1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
4 changes: 2 additions & 2 deletions test/input_files/v4.1/failed/failed_body_chrom_002.vcf
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##fileformat=VCFv4.1
##CauseOfFailure=contig ID contains a whitespace
##CauseOfFailure=contig ID contains a comma
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
chr 1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
chr,1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
4 changes: 0 additions & 4 deletions test/input_files/v4.1/failed/failed_body_chrom_003.vcf
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4 changes: 2 additions & 2 deletions test/input_files/v4.2/failed/failed_body_chrom_001.vcf
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##fileformat=VCFv4.2
##CauseOfFailure=contig ID contains a colon
##CauseOfFailure=contig ID contains a whitespace
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
chr:1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
chr 1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
4 changes: 2 additions & 2 deletions test/input_files/v4.2/failed/failed_body_chrom_002.vcf
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##fileformat=VCFv4.2
##CauseOfFailure=contig ID contains a whitespace
##CauseOfFailure=contig ID contains a comma
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
chr 1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
chr,1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
4 changes: 0 additions & 4 deletions test/input_files/v4.2/failed/failed_body_chrom_003.vcf
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4 changes: 2 additions & 2 deletions test/input_files/v4.3/failed/failed_body_chrom_001.vcf
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##fileformat=VCFv4.3
##CauseOfFailure=contig ID contains a colon
##CauseOfFailure=contig ID contains a whitespace
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
chr:1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
chr 1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
4 changes: 2 additions & 2 deletions test/input_files/v4.3/failed/failed_body_chrom_002.vcf
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@@ -1,4 +1,4 @@
##fileformat=VCFv4.3
##CauseOfFailure=contig ID contains a whitespace
##CauseOfFailure=contig ID contains a comma
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
chr 1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
chr,1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
4 changes: 2 additions & 2 deletions test/input_files/v4.3/failed/failed_body_chrom_003.vcf
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@@ -1,4 +1,4 @@
##fileformat=VCFv4.3
##CauseOfFailure=contig ID contains a comma
##CauseOfFailure=contig ID contains illegal character
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT HG00096 HG00097
chr,1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
chr*1 13302 rs180734498 C T 100 PASS AN=2184;AC=249;AF=0.11 GT:DS:GL 0|0:0.050:-0.13,-0.58,-3.62 0|1:1.000:-2.45,-0.00,-5.00
4 changes: 0 additions & 4 deletions test/input_files/v4.3/failed/failed_body_chrom_004.vcf
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