Release version 4.2.0

New Features

• Add Hi-C accessioning

Release version 4.1.0

New Features

• Added quality_standard for ATAC

Bugfixes

• Added quality_standard for MINT ChIP and RNA

Release version 4.0.3

Bugfixes

• Fixed a bug where getting metadata was hanging when using string labels to reference workflows

Release version 4.0.2

Bugfixes

• Fixed error raised when calling info with no ids

Release version 4.0.1

Bugfixes

• Fixed missing subcommands

Release version 4.0.0

New Features

• Added pbam bulk RNA template
• Updated s3 to s3 copy mechanism to use boto3.S3Client.copy to improve speed.
  • For this to work you must configure the bucket policy
• Add link to appropriate QualityStandards object in Analysis
• Add local storage of accessioning results

Bugfixes

• STAR QC metrics are now shared between alignments and transcriptome alignments

Other Changes

• Updated caper to a more recent version
• Improved error messages when step run fails to post
• Updated CircleCI configuration to make tests (hopefully) less flaky

Release version 3.11.0

New Features

• Added preferred_defaults for microRNA
• Added gene quantifications to preferred_defaults for bulk RNA

Release version 3.10.0

New Features

• Added ability to obtain md5sums of ENCODE files from the portal
• Added ability to obtain md5sums of files from S3 object tags

Release version 3.9.1

Bugfixes

• Fixed incorrect step version in TF ChIP BWA template

Release version 3.9.0

New Features

• Added AWS backend for accessioning AWS pipeline runs
• Added template for TF ChIP using BWA