Release version 2.2.1

Bugfixes

• Updated to encode_utils 2.10.0

Release version 2.2.0

New Features

• Added a Python script for easier deployment to Google Cloud

Bugfixes

• Fixed a bug that would cause failures parsing Cromwell metadata when a task failed and therefore had no outputs

Release version 2.1.0

New Features

• Added batch accessioning, can now pass a file containing multiple paths to metadata JSON files or Caper workflow IDs/labels

Bugfixes

• Fixed a bug that would cause accessioning to incorrectly terminate even if no md5 conflicts were found

Release version 2.0.0

Breaking Changes

• Code will not accession in the event of md5 conflicts, can use -f/--force to override

New Features

• Can now use Google Cloud Tasks to upload files, see documentation for details

Release version 1.9.0

New Features

• -m/--metadata-json option can now accept Caper labels or workflow IDs in addition to the normal paths to JSON files assuming the Caper config file ~/.caper/default.conf is present with hostname or ip and port specified and access to the server is configured correctly. Values passed via -m are first interpreted as files and subsequently interpreted as Caper labels if the file path does not exist.

Release version 1.8.0

New Features

• Updated long read accessioning for the ENCODE long read RNA pipeline v2.0.0

Release version 1.7.1

Bugfixes

Fixed a bug in ATAC library quality metric QC that caused a schema validation error on POST.

Release version 1.7.0

New Features

• Added accessioning ATAC-seq via -p atac
• internal_status is now only patched to pipeline completed after completion of file upload

Release version 1.6.0

New Features

• Experiment internal status is now patched to pipeline completed upon successful accessioning

Bugfixes

• IDR ranked peaks for the ChIP pipeline now have an additional metadata field set in order to be validated properly by the portal

Release version 1.5.1

Bugfixes

• Fixed a bug that would cause duplication in the derived_from of files being posted to the portal