Merge pull request #252 from ENCODE-DCC/dev

v2.1.2
ENCODE-DCC · Dec 9, 2021 · a0e1504 · a0e1504
2 parents 9864cbd + eff97fd
commit a0e1504
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Showing 2 changed files with 9 additions and 6 deletions.
diff --git a/chip.wdl b/chip.wdl
@@ -7,10 +7,10 @@ struct RuntimeEnvironment {
 }
 
 workflow chip {
- String pipeline_ver = 'v2.1.1'
+ String pipeline_ver = 'v2.1.2'
 
  meta {
- version: 'v2.1.1'
+ version: 'v2.1.2'
 
  author: 'Jin wook Lee'
  email: 'leepc12@gmail.com'
@@ -19,8 +19,8 @@ workflow chip {
 
  specification_document: 'https://docs.google.com/document/d/1lG_Rd7fnYgRpSIqrIfuVlAz2dW1VaSQThzk836Db99c/edit?usp=sharing'
 
- default_docker: 'encodedcc/chip-seq-pipeline:v2.1.1'
- default_singularity: 'library://leepc12/default/chip-seq-pipeline:v2.1.1'
+ default_docker: 'encodedcc/chip-seq-pipeline:v2.1.2'
+ default_singularity: 'https://encode-pipeline-singularity-image.s3.us-west-2.amazonaws.com/chip-seq-pipeline_v2.1.2.sif'
  croo_out_def: 'https://storage.googleapis.com/encode-pipeline-output-definition/chip.croo.v5.json'
 
  parameter_group: {
@@ -71,8 +71,8 @@ workflow chip {
  }
  input {
  # group: runtime_environment
- String docker = 'encodedcc/chip-seq-pipeline:v2.1.1'
- String singularity = 'library://leepc12/default/chip-seq-pipeline:v2.1.1'
+ String docker = 'encodedcc/chip-seq-pipeline:v2.1.2'
+ String singularity = 'https://encode-pipeline-singularity-image.s3.us-west-2.amazonaws.com/chip-seq-pipeline_v2.1.2.sif'
  String conda = 'encode-chip-seq-pipeline'
  String conda_macs2 = 'encode-chip-seq-pipeline-macs2'
  String conda_spp = 'encode-chip-seq-pipeline-spp'

diff --git a/scripts/requirements.spp.txt b/scripts/requirements.spp.txt
@@ -5,6 +5,9 @@ bedtools ==2.29.0
 bedops ==2.4.39
 phantompeakqualtools ==1.2.2
 
+ucsc-bedclip
+ucsc-bedtobigbed
+
 r #==3.5.1 # 3.4.4 in docker/singularity image
 r-snow
 r-snowfall