IN PROGRESS

downstream_annotation

Wrapper scripts and tools for annotation of SNPs and results from GWAS and QTL studies

Requirements

See requirements files and Dockerfile for full information. At the least you'll need:

• CGATCore
• R >= 3.2
• Python >= 3.5
• r-docopt
• r-data.table
• r-ggplot2

Installation

pip install git+git://github.com/EpiCompBio/downstream_annotation.git

To use

# Create a folder or a whole data science project, e.g. project_quickstart -n annotate_qtl
cd annotate_qtl/results
xxxx

Contribute

• Issue Tracker

• Pull requests welcome!

Support

If you have any issues, pull requests, etc. please report them in the issue tracker.