cleaned up dependencies

KevinMenden · Dec 16, 2020 · f5757cc · f5757cc
1 parent d79807c
commit f5757cc
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Showing 2 changed files with 4 additions and 6 deletions.
diff --git a/docs/changelog.md b/docs/changelog.md
@@ -3,6 +3,7 @@
 ### Version 0.9.6
 + fixed Dockerfile (switched to pip installation)
 + added better error messages to `simulate` command
++ cleaned up dependencies
 
 ### Version 0.9.5
 + added `scaden simulate` command to perform bulk simulation and training file creation

diff --git a/setup.py b/setup.py
@@ -30,13 +30,10 @@
         'pandas',
         'numpy',
         'scikit-learn',
-        'scipy',
         'tensorflow>=2.0',
         'anndata',
         'tqdm',
-        'click'
-    ],
-    extras_require = {
-        'scanpy':  ["scanpy", "matplotlib", "seaborn"]
-    }
+        'click',
+        'h5py~=2.10.0'
+    ]
 )