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Scaden v1.1.0
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@KevinMenden KevinMenden released this 25 Mar 06:15
· 13 commits to master since this release
v1.1.0
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Learn about vigilant mode.

This release drastically reduces the memory usage of Scaden when simulating data from a large number of datasets. There are also some other smaller, new features that will improve the usability. Have a look at the changelog below for a detailed list.

Improvements

  • Reduced memory usage of scaden simulate significantly by performing simulation for one dataset at a time.
  • Using .h5ad format to store simulated data
  • Allow reading data in .h5ad format for improved performance (courtesy of @eboileau)
  • Improved logging and using rich progress bar for training
  • Gene subsetting is now done only when merging datasets, which will allow to generate different combinations
    of simulated datasets
  • Added scaden merge command which allows merging of previously created datasets
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