organize the 22023 template repository content

ModelSEED · Sep 5, 2023 · e7c522c · e7c522c
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diff --git a/.DS_Store b/.DS_Store
diff --git a/2021.February.release/CoreModelTemplateV3.json b/2021.February.release/CoreModelTemplateV3.json
diff --git a/2021.February.release/GramNegModelTemplateV3.json b/2021.February.release/GramNegModelTemplateV3.json
diff --git a/2021.February.release/GramPosModelTemplateV3.json b/2021.February.release/GramPosModelTemplateV3.json
diff --git a/2023.September.release/README.md b/2023.September.release/README.md
diff --git a/Core_CHANGELOG.md → ChangeLogs/Core_CHANGELOG.md b/Core_CHANGELOG.md → ChangeLogs/Core_CHANGELOG.md
diff --git a/GramNegative_CHANGELOG.md → ChangeLogs/GramNegative_CHANGELOG.md b/GramNegative_CHANGELOG.md → ChangeLogs/GramNegative_CHANGELOG.md
diff --git a/GramPositive_CHANGELOG.md → ChangeLogs/GramPositive_CHANGELOG.md b/GramPositive_CHANGELOG.md → ChangeLogs/GramPositive_CHANGELOG.md
diff --git a/Plant_CHANGELOG.md → ChangeLogs/Plant_CHANGELOG.md b/Plant_CHANGELOG.md → ChangeLogs/Plant_CHANGELOG.md
diff --git a/...ember.release/ArchaeaModelTemplateV5.json → templates/ArchaeaModelTemplateV5.json b/...ember.release/ArchaeaModelTemplateV5.json → templates/ArchaeaModelTemplateV5.json
diff --git a/...eptember.release/CoreModelTemplateV5.json → templates/CoreModelTemplateV5.json b/...eptember.release/CoreModelTemplateV5.json → templates/CoreModelTemplateV5.json
diff --git a/...ember.release/GramNegModelTemplateV5.json → templates/GramNegModelTemplateV5.json b/...ember.release/GramNegModelTemplateV5.json → templates/GramNegModelTemplateV5.json
diff --git a/...ember.release/GramPosModelTemplateV5.json → templates/GramPosModelTemplateV5.json b/...ember.release/GramPosModelTemplateV5.json → templates/GramPosModelTemplateV5.json
diff --git a/Legacy Templates/Core/BiomassCompounds.tsv → ...egacy Templates/Core/BiomassCompounds.tsv b/Legacy Templates/Core/BiomassCompounds.tsv → ...egacy Templates/Core/BiomassCompounds.tsv
diff --git a/Legacy Templates/Core/Biomasses.tsv → ...lates/Legacy Templates/Core/Biomasses.tsv b/Legacy Templates/Core/Biomasses.tsv → ...lates/Legacy Templates/Core/Biomasses.tsv
diff --git a/Legacy Templates/Core/Compartments.tsv → ...es/Legacy Templates/Core/Compartments.tsv b/Legacy Templates/Core/Compartments.tsv → ...es/Legacy Templates/Core/Compartments.tsv
diff --git a/Legacy Templates/Core/Reactions.tsv → ...lates/Legacy Templates/Core/Reactions.tsv b/Legacy Templates/Core/Reactions.tsv → ...lates/Legacy Templates/Core/Reactions.tsv
diff --git a/Legacy Templates/Fungi/BiomassCompounds.tsv → ...gacy Templates/Fungi/BiomassCompounds.tsv b/Legacy Templates/Fungi/BiomassCompounds.tsv → ...gacy Templates/Fungi/BiomassCompounds.tsv
diff --git a/Legacy Templates/Fungi/Biomasses.tsv → ...ates/Legacy Templates/Fungi/Biomasses.tsv b/Legacy Templates/Fungi/Biomasses.tsv → ...ates/Legacy Templates/Fungi/Biomasses.tsv
diff --git a/Legacy Templates/Fungi/Compartments.tsv → ...s/Legacy Templates/Fungi/Compartments.tsv b/Legacy Templates/Fungi/Compartments.tsv → ...s/Legacy Templates/Fungi/Compartments.tsv
diff --git a/Legacy Templates/Fungi/Fungi.json → templates/Legacy Templates/Fungi/Fungi.json b/Legacy Templates/Fungi/Fungi.json → templates/Legacy Templates/Fungi/Fungi.json
diff --git a/Legacy Templates/Fungi/Reactions.tsv → ...ates/Legacy Templates/Fungi/Reactions.tsv b/Legacy Templates/Fungi/Reactions.tsv → ...ates/Legacy Templates/Fungi/Reactions.tsv
diff --git a/...mplates/GramNegative/BiomassCompounds.tsv → ...mplates/GramNegative/BiomassCompounds.tsv b/...mplates/GramNegative/BiomassCompounds.tsv → ...mplates/GramNegative/BiomassCompounds.tsv
diff --git a/Legacy Templates/GramNegative/Biomasses.tsv → ...gacy Templates/GramNegative/Biomasses.tsv b/Legacy Templates/GramNegative/Biomasses.tsv → ...gacy Templates/GramNegative/Biomasses.tsv
diff --git a/...y Templates/GramNegative/Compartments.tsv → ...y Templates/GramNegative/Compartments.tsv b/...y Templates/GramNegative/Compartments.tsv → ...y Templates/GramNegative/Compartments.tsv
diff --git a/Legacy Templates/GramNegative/Reactions.tsv → ...gacy Templates/GramNegative/Reactions.tsv b/Legacy Templates/GramNegative/Reactions.tsv → ...gacy Templates/GramNegative/Reactions.tsv
diff --git a/...mplates/GramPositive/BiomassCompounds.tsv → ...mplates/GramPositive/BiomassCompounds.tsv b/...mplates/GramPositive/BiomassCompounds.tsv → ...mplates/GramPositive/BiomassCompounds.tsv
diff --git a/Legacy Templates/GramPositive/Biomasses.tsv → ...gacy Templates/GramPositive/Biomasses.tsv b/Legacy Templates/GramPositive/Biomasses.tsv → ...gacy Templates/GramPositive/Biomasses.tsv
diff --git a/...y Templates/GramPositive/Compartments.tsv → ...y Templates/GramPositive/Compartments.tsv b/...y Templates/GramPositive/Compartments.tsv → ...y Templates/GramPositive/Compartments.tsv
diff --git a/Legacy Templates/GramPositive/Reactions.tsv → ...gacy Templates/GramPositive/Reactions.tsv b/Legacy Templates/GramPositive/Reactions.tsv → ...gacy Templates/GramPositive/Reactions.tsv
diff --git a/Legacy Templates/Human/BiomassCompounds.tsv → ...gacy Templates/Human/BiomassCompounds.tsv b/Legacy Templates/Human/BiomassCompounds.tsv → ...gacy Templates/Human/BiomassCompounds.tsv
diff --git a/Legacy Templates/Human/Biomasses.tsv → ...ates/Legacy Templates/Human/Biomasses.tsv b/Legacy Templates/Human/Biomasses.tsv → ...ates/Legacy Templates/Human/Biomasses.tsv
diff --git a/Legacy Templates/Human/Compartments.tsv → ...s/Legacy Templates/Human/Compartments.tsv b/Legacy Templates/Human/Compartments.tsv → ...s/Legacy Templates/Human/Compartments.tsv
diff --git a/Legacy Templates/Human/Reactions.tsv → ...ates/Legacy Templates/Human/Reactions.tsv b/Legacy Templates/Human/Reactions.tsv → ...ates/Legacy Templates/Human/Reactions.tsv
diff --git a/... Templates/Microbial/BiomassCompounds.tsv → ... Templates/Microbial/BiomassCompounds.tsv b/... Templates/Microbial/BiomassCompounds.tsv → ... Templates/Microbial/BiomassCompounds.tsv
diff --git a/Legacy Templates/Microbial/Biomasses.tsv → .../Legacy Templates/Microbial/Biomasses.tsv b/Legacy Templates/Microbial/Biomasses.tsv → .../Legacy Templates/Microbial/Biomasses.tsv
diff --git a/Legacy Templates/Microbial/Compartments.tsv → ...gacy Templates/Microbial/Compartments.tsv b/Legacy Templates/Microbial/Compartments.tsv → ...gacy Templates/Microbial/Compartments.tsv
diff --git a/Legacy Templates/Microbial/README.txt → ...tes/Legacy Templates/Microbial/README.txt b/Legacy Templates/Microbial/README.txt → ...tes/Legacy Templates/Microbial/README.txt
diff --git a/Legacy Templates/Microbial/Reactions.tsv → .../Legacy Templates/Microbial/Reactions.tsv b/Legacy Templates/Microbial/Reactions.tsv → .../Legacy Templates/Microbial/Reactions.tsv
diff --git a/...mplates/Mycobacteria/BiomassCompounds.tsv → ...mplates/Mycobacteria/BiomassCompounds.tsv b/...mplates/Mycobacteria/BiomassCompounds.tsv → ...mplates/Mycobacteria/BiomassCompounds.tsv
diff --git a/Legacy Templates/Mycobacteria/Biomasses.tsv → ...gacy Templates/Mycobacteria/Biomasses.tsv b/Legacy Templates/Mycobacteria/Biomasses.tsv → ...gacy Templates/Mycobacteria/Biomasses.tsv
diff --git a/...y Templates/Mycobacteria/Compartments.tsv → ...y Templates/Mycobacteria/Compartments.tsv b/...y Templates/Mycobacteria/Compartments.tsv → ...y Templates/Mycobacteria/Compartments.tsv
diff --git a/Legacy Templates/Mycobacteria/Reactions.tsv → ...gacy Templates/Mycobacteria/Reactions.tsv b/Legacy Templates/Mycobacteria/Reactions.tsv → ...gacy Templates/Mycobacteria/Reactions.tsv
diff --git a/Legacy Templates/Plant/BiomassCompounds.tsv → ...gacy Templates/Plant/BiomassCompounds.tsv b/Legacy Templates/Plant/BiomassCompounds.tsv → ...gacy Templates/Plant/BiomassCompounds.tsv
diff --git a/Legacy Templates/Plant/Biomasses.tsv → ...ates/Legacy Templates/Plant/Biomasses.tsv b/Legacy Templates/Plant/Biomasses.tsv → ...ates/Legacy Templates/Plant/Biomasses.tsv
diff --git a/Legacy Templates/Plant/Compartments.tsv → ...s/Legacy Templates/Plant/Compartments.tsv b/Legacy Templates/Plant/Compartments.tsv → ...s/Legacy Templates/Plant/Compartments.tsv
diff --git a/Legacy Templates/Plant/Reactions.tsv → ...ates/Legacy Templates/Plant/Reactions.tsv b/Legacy Templates/Plant/Reactions.tsv → ...ates/Legacy Templates/Plant/Reactions.tsv
diff --git a/...ransport_Main_Compartment_Translation.tsv → ...ransport_Main_Compartment_Translation.tsv b/...ransport_Main_Compartment_Translation.tsv → ...ransport_Main_Compartment_Translation.tsv
diff --git a/Legacy Templates/README.md → templates/Legacy Templates/README.md b/Legacy Templates/README.md → templates/Legacy Templates/README.md
diff --git a/Legacy Templates/Template.spec → templates/Legacy Templates/Template.spec b/Legacy Templates/Template.spec → templates/Legacy Templates/Template.spec
diff --git a/templates/README.md b/templates/README.md
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+# New template release coinciding with manuscript public on bioarchive here
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		# New template release coinciding with manuscript public on bioarchive here