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Merge pull request #595 from MouseLand/badges
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adding rtd and badges
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carsen-stringer authored Feb 29, 2024
2 parents 4d90df7 + 061c1ed commit 81cf522
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31 changes: 31 additions & 0 deletions .readthedocs.yml
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# Read the Docs configuration file
# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details

# Required
version: 2

build:
os: ubuntu-22.04
tools:
python: "3.11"

# Build documentation in the docs/ directory with Sphinx
sphinx:
configuration: docs/conf.py

# Build documentation with MkDocs
#mkdocs:
# configuration: mkdocs.yml

# Optionally build your docs in additional formats such as PDF
formats:
- pdf

# specify dependencies
python:
install:
- requirements: docs/requirements.txt
- method: pip
path: .
extra_requirements:
- docs
15 changes: 14 additions & 1 deletion README.md
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# Kilosort4 pre-release
# Kilosort4

[![Documentation Status](https://readthedocs.org/projects/kilosort/badge/?version=latest)](https://kilosort.readthedocs.io/en/latest/?badge=latest)
![tests](https://github.com/mouseland/kilosort/actions/workflows/test_and_deploy.yml/badge.svg)
[![PyPI version](https://badge.fury.io/py/kilosort.svg)](https://badge.fury.io/py/kilosort)
[![Downloads](https://pepy.tech/badge/kilosort)](https://pepy.tech/project/kilosort)
[![Downloads](https://pepy.tech/badge/kilosort/month)](https://pepy.tech/project/kilosort)
[![Python version](https://img.shields.io/pypi/pyversions/kilosort)](https://pypistats.org/packages/kilosort)
[![Licence: GPL v3](https://img.shields.io/github/license/MouseLand/kilosort)](https://github.com/MouseLand/kilosort/blob/master/LICENSE)
[![Contributors](https://img.shields.io/github/contributors-anon/MouseLand/kilosort)](https://github.com/MouseLand/kilosort/graphs/contributors)
[![repo size](https://img.shields.io/github/repo-size/MouseLand/kilosort)](https://github.com/MouseLand/kilosort/)
[![GitHub stars](https://img.shields.io/github/stars/MouseLand/kilosort?style=social)](https://github.com/MouseLand/kilosort/)
[![GitHub forks](https://img.shields.io/github/forks/MouseLand/kilosort?style=social)](https://github.com/MouseLand/kilosort/)


You can run Kilosort4 without installing it locally using google colab. An example colab notebook is available [here](https://colab.research.google.com/drive/1gFZa8TEBDXmg_CB5RwuT_52Apl3hP0Ie?usp=sharing). It will download some test data, run kilosort4 on it, and show some plots.

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5 changes: 5 additions & 0 deletions docs/requirements.txt
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ipykernel
nbsphinx
sphinx==5.3.0
sphinx_rtd_theme==1.1.1
readthedocs-sphinx-search==0.3.2

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