Merge pull request #218 from OHDSI/develop

Release v3.3.2
OHDSI · Nov 21, 2023 · 6a7e90a · 6a7e90a
2 parents 1face4d + b01c826
commit 6a7e90a
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,8 +1,8 @@
 Package: FeatureExtraction
 Type: Package
 Title: Generating Features for a Cohort
-Version: 3.3.1
-Date: 2023-09-25
+Version: 3.3.2
+Date: 2023-11-20
 Authors@R: c(
   person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut")),
   person("Marc", "Suchard", role = c("aut")),

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,10 @@
+FeatureExtraction 3.3.2
+=======================
+
+Bug Fixes:
+
+- Fixes R check on GitHub Actions (#211) 
+
 FeatureExtraction 3.3.1
 =======================
 

diff --git a/R/Table1.R b/R/Table1.R
@@ -31,6 +31,8 @@
 #' @export
 getDefaultTable1Specifications <- function() {
   fileName <- system.file("csv", "Table1Specs.csv", package = "FeatureExtraction")
+  # Workaround for issue https://github.com/tidyverse/vroom/issues/519:
+  readr::local_edition(1)
   colTypes <- list(label = readr::col_character(), analysisId = readr::col_integer(), covariateIds = readr::col_character())
   specifications <- readr::read_csv(fileName, col_types = colTypes)
   return(specifications)

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html b/docs/articles/CreatingCovariatesBasedOnOtherCohorts.html
diff --git a/docs/articles/CreatingCovariatesUsingCohortAttributes.html b/docs/articles/CreatingCovariatesUsingCohortAttributes.html
diff --git a/docs/articles/CreatingCustomCovariateBuilders.html b/docs/articles/CreatingCustomCovariateBuilders.html
diff --git a/docs/articles/CreatingCustomCovariateBuildersKorean.html b/docs/articles/CreatingCustomCovariateBuildersKorean.html
diff --git a/docs/articles/UsingFeatureExtraction.html b/docs/articles/UsingFeatureExtraction.html
diff --git a/docs/articles/UsingFeatureExtractionKorean.html b/docs/articles/UsingFeatureExtractionKorean.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -8,5 +8,5 @@ articles:
   CreatingCustomCovariateBuildersKorean: CreatingCustomCovariateBuildersKorean.html
   UsingFeatureExtraction: UsingFeatureExtraction.html
   UsingFeatureExtractionKorean: UsingFeatureExtractionKorean.html
-last_built: 2023-09-25T19:05Z
+last_built: 2023-11-20T14:45Z
 
diff --git a/docs/pull_request_template.html b/docs/pull_request_template.html
diff --git a/docs/reference/CovariateData-class.html b/docs/reference/CovariateData-class.html
diff --git a/docs/reference/FeatureExtraction-package.html b/docs/reference/FeatureExtraction-package.html
diff --git a/docs/reference/aggregateCovariates.html b/docs/reference/aggregateCovariates.html
diff --git a/docs/reference/computeStandardizedDifference.html b/docs/reference/computeStandardizedDifference.html
diff --git a/docs/reference/convertPrespecSettingsToDetailedSettings.html b/docs/reference/convertPrespecSettingsToDetailedSettings.html
diff --git a/docs/reference/createAnalysisDetails.html b/docs/reference/createAnalysisDetails.html
diff --git a/docs/reference/createCohortAttrCovariateSettings.html b/docs/reference/createCohortAttrCovariateSettings.html
diff --git a/docs/reference/createCohortBasedCovariateSettings.html b/docs/reference/createCohortBasedCovariateSettings.html
diff --git a/docs/reference/createCohortBasedTemporalCovariateSettings.html b/docs/reference/createCohortBasedTemporalCovariateSettings.html
diff --git a/docs/reference/createCovariateSettings.html b/docs/reference/createCovariateSettings.html
diff --git a/docs/reference/createDefaultCovariateSettings.html b/docs/reference/createDefaultCovariateSettings.html
diff --git a/docs/reference/createDefaultTemporalCovariateSettings.html b/docs/reference/createDefaultTemporalCovariateSettings.html
diff --git a/docs/reference/createDetailedCovariateSettings.html b/docs/reference/createDetailedCovariateSettings.html
diff --git a/docs/reference/createDetailedTemporalCovariateSettings.html b/docs/reference/createDetailedTemporalCovariateSettings.html
diff --git a/docs/reference/createEmptyCovariateData.html b/docs/reference/createEmptyCovariateData.html
diff --git a/docs/reference/createTable1.html b/docs/reference/createTable1.html
diff --git a/docs/reference/createTable1CovariateSettings.html b/docs/reference/createTable1CovariateSettings.html
diff --git a/docs/reference/createTemporalCovariateSettings.html b/docs/reference/createTemporalCovariateSettings.html
diff --git a/docs/reference/createTemporalSequenceCovariateSettings.html b/docs/reference/createTemporalSequenceCovariateSettings.html