Release version 3.26.1

* Ensures cohorts that are withdrawn or deprecated, do not appear in log * Update function getPhenotypeLog * package maintenance
OHDSI · Oct 9, 2023 · bb6bf8f · bb6bf8f
1 parent ab9bf84
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,7 +1,7 @@
 Package: PhenotypeLibrary
 Type: Package
 Title: The OHDSI Phenotype Library
-Version: 3.26.0
+Version: 3.27.0
 Date: 2023-10-09
 Author: Gowtham Rao [aut, cre]
 Maintainer: Gowtham Rao <rao@ohdsi.org>

diff --git a/NEWS.md b/NEWS.md
@@ -1,3 +1,9 @@
+PhenotypeLibrary 3.27.0
+======================
+Accepted Cohorts: No cohorts were accepted in this release.
+
+New Cohorts: No new cohorts were added in this release.
+
 PhenotypeLibrary 3.26.0
 ======================
 Accepted Cohorts: No cohorts were accepted in this release.

diff --git a/R/Phenotypes.R b/R/Phenotypes.R
@@ -130,6 +130,20 @@ getPhenotypeLog <- function(cohortIds = NULL,
  string = tolower(.data$status),
  pattern = "accepted"
  )
+ ) |>
+ dplyr::filter(
+ stringr::str_detect(
+ string = .data$cohortName,
+ pattern = stringr::fixed("[W]"),
+ negate = TRUE
+ )
+ ) |>
+ dplyr::filter(
+ stringr::str_detect(
+ string = .data$cohortName,
+ pattern = stringr::fixed("[D]"),
+ negate = TRUE
+ )
  )
  }
 

diff --git a/docs/404.html b/docs/404.html
diff --git a/docs/articles/CohortDefinitionSubmissionRequirements.html b/docs/articles/CohortDefinitionSubmissionRequirements.html
diff --git a/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/CohortDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html b/docs/articles/ConceptSetDefinitionsInOhdsiPhenotypeLibrary.html
diff --git a/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html b/docs/articles/GuidanceOnClinicalDescriptionForConditionPhenotypes.html
diff --git a/docs/articles/GuidanceOnCohortDefinitionSetRObject.html b/docs/articles/GuidanceOnCohortDefinitionSetRObject.html
diff --git a/docs/articles/GuidanceOnLiteratureReview.html b/docs/articles/GuidanceOnLiteratureReview.html
diff --git a/docs/articles/GuidanceOnPerformingPeerReview.html b/docs/articles/GuidanceOnPerformingPeerReview.html
diff --git a/docs/articles/GuidanceOnWritingAnEvaluationReport.html b/docs/articles/GuidanceOnWritingAnEvaluationReport.html
diff --git a/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html b/docs/articles/GuidanceOnWritingCohortDefinitionLogicDescription.html
diff --git a/docs/articles/HowToUsePhenotypeLibraryRPackage.html b/docs/articles/HowToUsePhenotypeLibraryRPackage.html
diff --git a/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html b/docs/articles/ReservedWordsWithSpecialMeaningToPhenotypers.html
diff --git a/docs/articles/SubmittedCohortDefinitions.html b/docs/articles/SubmittedCohortDefinitions.html
diff --git a/docs/articles/ValidityChecksForCohortDefinitions.html b/docs/articles/ValidityChecksForCohortDefinitions.html
diff --git a/docs/articles/index.html b/docs/articles/index.html
diff --git a/docs/authors.html b/docs/authors.html
diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/news/index.html b/docs/news/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -15,5 +15,5 @@ articles:
  ReservedWordsWithSpecialMeaningToPhenotypers: ReservedWordsWithSpecialMeaningToPhenotypers.html
  SubmittedCohortDefinitions: SubmittedCohortDefinitions.html
  ValidityChecksForCohortDefinitions: ValidityChecksForCohortDefinitions.html
-last_built: 2023-10-09T14:52Z
+last_built: 2023-10-09T17:51Z
 
diff --git a/docs/reference/PhenotypeLibrary-package.html b/docs/reference/PhenotypeLibrary-package.html
diff --git a/docs/reference/getPhenotypeLog.html b/docs/reference/getPhenotypeLog.html
diff --git a/docs/reference/getPlCohortDefinitionSet.html b/docs/reference/getPlCohortDefinitionSet.html
diff --git a/docs/reference/getPlConceptDefinitionSet.html b/docs/reference/getPlConceptDefinitionSet.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/docs/reference/listPhenotypes.html b/docs/reference/listPhenotypes.html
diff --git a/extras/PhenotypeLibrary.pdf b/extras/PhenotypeLibrary.pdf