final update notebooks

PMBio · Sep 9, 2024 · e8c8681 · e8c8681
1 parent 06e9d03
commit e8c8681
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Showing 5 changed files with 281 additions and 793 deletions.
diff --git a/notebooks/nb1_spatialdata_objects.ipynb b/notebooks/nb1_spatialdata_objects.ipynb
diff --git a/notebooks/nb2_static_plotting.ipynb b/notebooks/nb2_static_plotting.ipynb
diff --git a/notebooks/nb3_interactive_plotting_with_napari.ipynb b/notebooks/nb3_interactive_plotting_with_napari.ipynb
@@ -29,8 +29,6 @@
    "metadata": {},
    "outputs": [],
    "source": [
-    "%load_ext jupyter_black\n",
-    "\n",
     "data_path = \"../data/\""
    ]
   },
@@ -215,7 +213,6 @@
     "        \"ifi6_hotspots\",\n",
     "        outline_alpha=1,\n",
     "        contour_px=300,\n",
-    "        # method=\"matplotlib\",\n",
     "        fill_alpha=0.5,\n",
     "    )\n",
     "    .pl.show(\"downscaled_hires\")\n",

diff --git a/notebooks/nb4_simple_analysis_using_scverse_tools.ipynb b/notebooks/nb4_simple_analysis_using_scverse_tools.ipynb
diff --git a/notebooks/nbE1_transformations.ipynb b/notebooks/nbE1_transformations.ipynb