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52 Open 42 Closed
52 Open 42 Closed
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Issues list

Obtain data from Pavlo where metabolomics and transcriptomics was measured in the same conditions
#113 opened Sep 19, 2023 by djinnome 4b. Run Bayesian MCA on Cyano with transcriptomics and metabolomics in all conditions
@PBohutskyi
1
Concerto Discussion
#112 opened Sep 12, 2023 by djinnome 6a. Concerto publication
Concerto Results
#111 opened Sep 12, 2023 by djinnome 6a. Concerto publication
Concerto Methods
#110 opened Sep 12, 2023 by djinnome 6a. Concerto publication
Concerto Introduction
#109 opened Sep 12, 2023 by djinnome 6a. Concerto publication
Concerto Abstract
#108 opened Sep 12, 2023 by djinnome 6a. Concerto publication
Test whether Azo grows on Glycolate with and without ammonium
#107 opened Sep 12, 2023 by djinnome
@mcnaughtonadm
Set up overleaf for milestone 6a. Concerto publication
#106 opened Sep 12, 2023 by djinnome
@mcnaughtonadm
Bayesian MCA Discussion
#105 opened Aug 27, 2023 by djinnome 6b. Bayesian MCA publication
Bayesian MCA Results
#104 opened Aug 27, 2023 by djinnome 6b. Bayesian MCA publication
Bayesian MCA Methods
#103 opened Aug 27, 2023 by djinnome 6b. Bayesian MCA publication
Bayesian MCA Abstract
#102 opened Aug 27, 2023 by djinnome 6b. Bayesian MCA publication
Create FluxViz method ConcertoPaper
#101 opened Aug 4, 2023 by ShantMahserejian
@ShantMahserejian
Select dual carbon source for Azo-Rhodo consortia ConcertoPaper
#100 opened Jul 5, 2023 by djinnome
@mcnaughtonadm
5
visualization-friendly version of Carbon dioxide flux
#99 opened Jun 21, 2023 by djinnome
2 tasks
1
@mcnaughtonadm
6
simulate ternary consortium model to confirm no growth under tested media conditions
#98 opened Jun 21, 2023 by djinnome 3b. Test ternary consortia with observed phenotypes
Generate Memote pull request for github actions compatibility
#97 opened Jun 16, 2023 by djinnome
@JamesPino
1
Get binary azo-rhodo working with a carbon source that only rhodo grows on
#93 opened May 24, 2023 by djinnome 2c. Refine at least one binary consortium
@mcnaughtonadm
6
Get binary rhodo-cyano working with CO2 as sole carbon (ammonia is fine as a nitrogen source)
#92 opened May 24, 2023 by djinnome 2c. Refine at least one binary consortium
@mcnaughtonadm
1
Get binary azo-cyano working with CO2 and N2 as sole carbon and nitrogen sources
#91 opened May 24, 2023 by djinnome 2c. Refine at least one binary consortium
@mcnaughtonadm
1
explore if there is a way to run dynamic FBA for microbial consortia
#85 opened Apr 19, 2023 by vladpetyuk 999. for storing misc tasks
@mcnaughtonadm
1
Convert Pavlo's cyano-rhodo data to binary consortia unit tests
#84 opened Apr 19, 2023 by djinnome 2b. Test binary consortia models with available experimental data
@JamesPino
1
Review additional community modeling frameworks
#82 opened Mar 29, 2023 by djinnome 2c. Refine at least one binary consortium
@mcnaughtonadm
Get working BioCyc model
#79 opened Mar 24, 2023 by djinnome 1c. Refine metabolic models based on feedback of the memote tests
@ShantMahserejian
Fix MiCOM leaks
#76 opened Mar 24, 2023 by djinnome 2c. Refine at least one binary consortium
@djinnome @JamesPino @mcnaughtonadm
ProTip! Exclude everything labeled bug with -label:bug.