2b. Test binary consortia models with available experimental data
Past due by over 1 year
28% complete
old description
We'll fit the individual species growth curves with biomass fluxes.
For those binary consortia that have measured external metabolites, we can test secretions.
Description
Get experimental data:
- growth curves of the individual species in co-culture
- secreted metabolites in co-culture
Test model:
- Simulate the model in MICOM environment fo…
old description
We'll fit the individual species growth curves with biomass fluxes.
For those binary consortia that have measured external metabolites, we can test secretions.
Description
Get experimental data:
- growth curves of the individual species in co-culture
- secreted metabolites in co-culture
Test model:
- Simulate the model in MICOM environment for the proper media
- Compare against the experimental data (growth/no growth)
- (OPTIONAL) Fitting growth curves
Deliverables
- Conclusion(s) on the agreement of the simulation and the data
- (OPTIONAL) code for quantitative evaluation of the goodness-of-fit of the predictions to the experimental data