Species delimitation using Markov Chain Monte Carlo

#Overview of Command-line Parameters

Parameter	Explanation
--mcmc INT	Support values for the delimitation (INT steps).
--mcmc_sample INT	Sample every INT iteration (default: 1000).
--mcmc_log	Log samples and create SVG plot of log-likelihoods.
--mcmc_burnin INT	Ignore all MCMC steps below threshold.
--mcmc_chains INT	Run multiple chains.
--mcmc_credible REAL	Credible interval.
--mcmc_startnull	Start each chain with the null model (one single species).
--mcmc_startrandom	Start each chain with a random delimitation.
--mcmc_startml	Start each chain with the delimitation obtained by the Maximum-likelihood heuristic.

#Output Files #Examples of Convergence