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Refactor/11 convert to package #21

Merged
merged 117 commits into from
Jun 11, 2024
Merged

Refactor/11 convert to package #21

merged 117 commits into from
Jun 11, 2024

Commits on May 29, 2024

  1. Reflect new directory structure

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  2. Working build

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  3. add script, lightly modified from workflow.pacta

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  4. Move main script

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  5. Call an argumentless function as entrypoint

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  6. Move main script

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  7. Call an argumentless function as entrypoint

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  8. Add testing configs from workflow.pacta

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  9. Import logger functions

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  10. Add run_pacta script

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  11. Call new script from Dockerfile

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  12. Create dir before chmodding

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  13. Update Rbuildignore and dockerignore

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  14. Use import logging functions from package namespace

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  15. Update upload URL

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  16. Use default testing portfolio for analysis results

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  17. fix line continuation

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  18. Factor utility functions to separate file

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  19. Remove TODO 

    #19
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  20. linting

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  21. Remove second chmod

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  22. render Docs

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  23. import log_debug

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  24. Add R checks from RMI-PACTA/actions

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  25. Remove unused variables

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  26. Report image doesn't need a portfolio mount

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  27. Remove unused shell script

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  28. Merge commit '2482339' into add-tests

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  29. Namespace functions from pacta.portfolio.utils

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  30. Namespace functions from pacta.portfolio.report

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  31. Namespace functions from pacta.executive.summary

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  32. namespace functions from jsonlite

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  33. Remvoe library call to fs and dplyr

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  34. Namespace functions from readr

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  35. Namespace functions in utils

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  36. Pass arguments to utility functions explicitly 

    Previously, had been inheriting from parent env.
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  37. Add argument to function

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  38. make DESCRIPTION have a complete sentence

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  39. rename utility function to snake_case

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  40. Merge branch 'refactor/11-convert-to-package' into add-tests

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  41. add .lintr

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  42. Factor interactive report process to own function

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  43. Factor executive summary process into own function

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  44. Increment version number to 0.0.0.9001

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  45. Render Docs

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Commits on May 30, 2024

  1. Download prepared index benchmarks in tests

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  2. Fix typo in variable name

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  3. change default logging level

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  4. Use dev version of dependency

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  5. Merge pull request #18 from RMI-PACTA/add-tests 

    Add tests
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  6. Pass cfg to prep functions

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  7. Add benchmark arguments to subfunctions

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  8. Add arguments for missing objects in report

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  9. Add arguments for missing objects in summary

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  10. Update function calls

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  11. Linting (indentation)

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  12. linting (brace)

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  13. remove unused variables

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  14. Download results from workflow.pacta, not create

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  15. add back in testing step

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  16. Fir envvar reference

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  17. Fix path

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  18. Don't download full pacta-data

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  19. Fix paths to testing results from workflow.pacta

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  20. Download manifest of pacta-data

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  21. Read pacta data path from test config

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  22. Export reports to own directory 

    In response to permissions error in current arrangement
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  23. Update calling function

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  24. Upload Reports

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  25. Add comment with links

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  26. Remove special characters from artifact name

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  27. Update comment json path

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  28. fix filenames

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  29. fix file name

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  30. Add the double /report

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Commits on May 31, 2024

  1. Specify analysuis outputs as config

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  2. Add benchmarks data to config

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  3. Change configs

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  4. Isolate Report Output dir

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  5. Isolate summary outputs

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  6. Update testing script

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  7. Update test prep

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  8. Create and change permissions for correct dir

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  9. Upload correct files

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  10. Provide correct link to ES

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  11. remove readonly flags on output binds

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  12. update summary url reference

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  13. Add dependency on pacta.workflow.utils

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  14. read params using pacta.workflow.utils

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  15. use params object for language select

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  16. rename cfg[[]] to params[[]]

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  17. remove last references to cfg in top-level script

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  18. factor cfg out of ES process

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  19. Fix bad quotes

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  20. Factor cfg out of interactive report process

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  21. update lintr sttings

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  22. Remove unused dependency

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  23. Add sysdeps

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  24. Allow test script to read PARAMs

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  25. Move file

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  26. simplify default params

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  27. Move params to config

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  28. Remove unneded class assignment

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  29. Fix call to real estate dir

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  30. Add more bind mounts

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  31. Fix bad path in test suite

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  32. Explicitly no validation yet

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  33. Add inheritance parameters

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  34. Disable test

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Commits on Jun 3, 2024

  1. Fix output paths in test

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  2. Use main branch for dependency 

    RMI-PACTA/pacta.portfolio.report#78 is merged
    @AlexAxthelm
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  3. Move start_year param to year-specific files

    @AlexAxthelm
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  4. Quic update for readme

    @AlexAxthelm
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Commits on Jun 4, 2024

  1. Apply suggestions from code review 

    Co-authored-by: CJ Yetman <cj@cjyetman.com>
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  2. reindent block

    @AlexAxthelm
    AlexAxthelm committed Jun 4, 2024
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  3. Fix docker label

    @AlexAxthelm
    AlexAxthelm committed Jun 4, 2024
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  4. Update error string

    @AlexAxthelm
    AlexAxthelm committed Jun 4, 2024
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